Construct: ORF ccsbBroad304_00668

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001858.1_s304c1, BRDN0000410757
Derived from:
ccsbBroadEn_00668
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GPM6B (2824)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00668
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2824 GPM6B glycoprotein M6B NM_001001996.2 100% 100%
2 human 2824 GPM6B glycoprotein M6B XM_017029432.1 93.5% 93.4% 0_1ins57;2_3delTGinsAA
3 human 2824 GPM6B glycoprotein M6B NM_001001995.3 89.2% 87.5% (many diffs)
4 human 2824 GPM6B glycoprotein M6B NM_005278.4 86.8% 86.8% 59_60ins120
5 human 2824 GPM6B glycoprotein M6B XM_011545497.2 83.3% 81.4% (many diffs)
6 human 2824 GPM6B glycoprotein M6B NM_001001994.3 80.2% 80.3% 0_1ins179;2_3delTG
7 human 2824 GPM6B glycoprotein M6B XM_005274489.5 77.2% 75.3% (many diffs)
8 human 2824 GPM6B glycoprotein M6B NM_001318729.1 71.1% 69.2% (many diffs)
9 mouse 14758 Gpm6b glycoprotein m6b NM_001177956.1 93.4% 98% (many diffs)
10 mouse 14758 Gpm6b glycoprotein m6b NM_001177957.1 93.4% 98% (many diffs)
11 mouse 14758 Gpm6b glycoprotein m6b XM_017318385.1 88.2% 90.7% (many diffs)
12 mouse 14758 Gpm6b glycoprotein m6b NM_001177955.1 83.6% 85.6% (many diffs)
13 mouse 14758 Gpm6b glycoprotein m6b NM_001177959.1 80.7% 85.5% (many diffs)
14 mouse 14758 Gpm6b glycoprotein m6b NM_001177960.1 80.7% 85.5% (many diffs)
15 mouse 14758 Gpm6b glycoprotein m6b XM_011247784.1 79% 79.1% (many diffs)
16 mouse 14758 Gpm6b glycoprotein m6b NM_001177961.1 74.1% 79% (many diffs)
17 mouse 14758 Gpm6b glycoprotein m6b NM_001177962.1 74.1% 79% (many diffs)
18 mouse 14758 Gpm6b glycoprotein m6b NM_001177958.1 71.9% 74% (many diffs)
19 mouse 14758 Gpm6b glycoprotein m6b NM_023122.3 65.9% 67.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
981
ORF length:
915
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa gccagccatg gaaactgcag ccgaggaaaa tactgaacaa agccaagaga
121gaaaagtgaa cagcagagct gaaatggaaa ttggcaggta ccactggatg tacccaggct
181caaagaacca ccagtaccat cccgtgccaa ccctggggga cagggctagc cccttgagca
241gtccaggctg ctttgaatgc tgcatcaagt gtctgggagg agtcccctac gcctccctgg
301tggccaccat cctctgcttc tccggggtgg ccttattctg cggctgtggg catgtggctc
361tcgcaggcac cgtggcgatt cttgagcaac acttctccac caacgccagt gaccatgcct
421tgctgagcga ggtgatacaa ctgatgcagt atgtcatcta tggaattgcg tcctttttct
481tcttgtatgg gatcattctg ttggcagaag gcttttacac cacaagtgca gtgaaagaac
541tgcacggtga gtttaaaaca accgcttgtg gccgatgcat cagtggaatg ttcgttttcc
601tcacctatgt gcttggagtg gcctggctgg gtgtgtttgg tttctcagcg gtgcccgtgt
661ttatgttcta caacatatgg tcaacttgtg aagtcatcaa gtcaccgcag accaacggga
721ccacgggtgt ggagcagatc tgtgtggata tccgacaata cggtatcatt ccttggaatg
781ctttccccgg aaaaatatgt ggctctgccc tggagaacat ctgcaacaca aacgagttct
841acatgtccta tcacctgttc attgtggcct gtgcaggagc tggtgccacc gtcattgccc
901tgctgatcta catgatggct actacatata actatgcggt tttgaagttt aagagtcggg
961aagattgctg cactaaattc tacccaactt tcttgtacaa agtggttggt aagcctatcc
1021ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1081ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)