Construct: ORF ccsbBroad304_01125

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012471.1_s304c1, BRDN0000406690
Derived from:
ccsbBroadEn_01125
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ORC4 (5000)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01125
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5000 ORC4 origin recognition complex ... NM_001190879.2 100% 100%
2 human 5000 ORC4 origin recognition complex ... NM_001374270.1 100% 100%
3 human 5000 ORC4 origin recognition complex ... NM_002552.5 100% 100%
4 human 5000 ORC4 origin recognition complex ... NM_181741.4 100% 100%
5 human 5000 ORC4 origin recognition complex ... NM_181742.3 100% 100%
6 human 5000 ORC4 origin recognition complex ... XM_011511255.2 100% 100%
7 human 5000 ORC4 origin recognition complex ... NM_001190882.2 83% 83% 0_1ins222
8 human 5000 ORC4 origin recognition complex ... NM_001190881.2 80.7% 80.7% 0_1ins252
9 human 5000 ORC4 origin recognition complex ... NM_001374272.1 80.7% 80.7% 0_1ins252
10 mouse 26428 Orc4 origin recognition complex,... NM_011958.3 88.1% 88.9% (many diffs)
11 mouse 26428 Orc4 origin recognition complex,... XM_006498063.3 88.1% 88.9% (many diffs)
12 mouse 26428 Orc4 origin recognition complex,... XM_006498064.3 88.1% 88.9% (many diffs)
13 mouse 26428 Orc4 origin recognition complex,... XM_006498065.3 88.1% 88.9% (many diffs)
14 mouse 26428 Orc4 origin recognition complex,... XM_006498066.3 75.9% 76.8% (many diffs)
15 mouse 26428 Orc4 origin recognition complex,... XR_001782774.1 59% (many diffs)
16 mouse 26428 Orc4 origin recognition complex,... XR_001782769.1 27.8% (many diffs)
17 mouse 26428 Orc4 origin recognition complex,... XR_001782772.1 27.8% (many diffs)
18 mouse 26428 Orc4 origin recognition complex,... XR_374094.2 27.2% (many diffs)
19 mouse 26428 Orc4 origin recognition complex,... NM_001177313.1 27.2% 26.1% (many diffs)
20 mouse 26428 Orc4 origin recognition complex,... XR_001782770.1 27% (many diffs)
21 mouse 26428 Orc4 origin recognition complex,... NR_033442.1 26.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1374
ORF length:
1308
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag cagtcgtaaa tcaaagagta acagcttaat tcacacagag tgcctttcac
121aggtacaaag aattttacgt gaaagatttt gtcgtcagag tccacatagt aacctatttg
181gagtgcaagt acaatacaaa cacttaagtg agctgctgaa aagaactgct ctccatggag
241agagtaactc tgtccttatt atcggacccc gaggatcagg aaaaactatg ttaataaatc
301atgctttgaa agaactcatg gaaatagaag aagtgagtga aaatgtatta caagttcact
361taaatggact gctgcagatc aatgacaaaa tcgccctaaa ggaaatcaca aggcagttaa
421atctggaaaa tgtagttgga gataaagttt ttggaagctt tgctgaaaac ctttcatttc
481ttctggaagc tttaaaaaaa ggtgaccgaa ctagcagttg cccagtgatc ttcatattag
541atgaatttga tctttttgct catcataaaa accaaacact tctctataat ctttttgaca
601tttctcagtc tgcacagacc ccaatagcag ttattggtct tacatgtaga ttggatattt
661tggaactctt agaaaaaaga gtgaagtcaa gattttctca ccggcagata cacttaatga
721attcatttgg ttttccacag tatgttaaaa tatttaaaga acagttatct ctacctgcag
781agtttccaga caaggttttt gctgagaagt ggaatgaaaa tgttcagtat ctctcagaag
841atagaagtgt gcaagaagta ctacagaagc atttcaatat cagcaaaaac ctgcggtcat
901tacacatgct attgatgctt gctttaaatc gagtaacagc atcgcaccca tttatgactg
961ccgtagatct aatggaagca agccaactgt gtagcatgga ctcgaaagca aatattgtac
1021atggtctatc agtcttggaa atctgtctta taatagcaat gaaacattta aatgacatct
1081atgaggaaga gccatttaat tttcaaatgg tctataatga gtttcagaag tttgttcaaa
1141ggaaagcaca ttccgtttat aattttgaaa aacctgttgt catgaaggct tttgaacact
1201tgcagcaatt agaattaata aagcccatgg aaagaacttc aggaaattca cagagagagt
1261accagctgat gaaactgctt ttggataata ctcaaattat gaatgctctg cagaaatatc
1321ccaactgtcc tacagatgtg aggcagtggg caacatcctc actaagctgg ttatgcccaa
1381ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
1441cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)