Construct: ORF ccsbBroad304_01393

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005965.1_s304c1, BRDN0000400326
Derived from:
ccsbBroadEn_01393
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RFX3 (5991)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01393
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5991 RFX3 regulatory factor X3 NM_001282116.1 100% 100%
2 human 5991 RFX3 regulatory factor X3 NM_134428.3 100% 100%
3 human 5991 RFX3 regulatory factor X3 XM_006716843.2 97.2% 97.2% 1969_2031del
4 human 5991 RFX3 regulatory factor X3 XM_006716844.2 97.2% 97.2% 1969_2031del
5 human 5991 RFX3 regulatory factor X3 XM_006716845.2 97.2% 97.2% 1969_2031del
6 human 5991 RFX3 regulatory factor X3 XM_011517998.2 97.2% 97.2% 1969_2031del
7 human 5991 RFX3 regulatory factor X3 XM_011517999.2 97.2% 97.2% 1969_2031del
8 human 5991 RFX3 regulatory factor X3 XM_017015000.2 97.2% 97.2% 1969_2031del
9 human 5991 RFX3 regulatory factor X3 XM_024447634.1 97.2% 97.2% 1969_2031del
10 human 5991 RFX3 regulatory factor X3 XM_024447635.1 97.2% 97.2% 1969_2031del
11 human 5991 RFX3 regulatory factor X3 XM_017015001.1 96.6% 96.6% 474_475ins75
12 human 5991 RFX3 regulatory factor X3 XM_024447632.1 96.5% 96.5% 1_18del;1987_2049del
13 human 5991 RFX3 regulatory factor X3 XM_006716840.2 96% 96% 1_30del;1999_2061del
14 human 5991 RFX3 regulatory factor X3 XM_024447633.1 94% 94% 474_475ins75;1894_1956del
15 human 5991 RFX3 regulatory factor X3 XM_024447630.1 93.6% 93.6% 1_90del;2059_2121del
16 human 5991 RFX3 regulatory factor X3 XM_024447631.1 93.6% 93.6% 1_90del;2059_2121del
17 human 5991 RFX3 regulatory factor X3 NM_002919.3 90.8% 87.9% (many diffs)
18 human 5991 RFX3 regulatory factor X3 XM_011518001.1 86.4% 86.4% 0_1ins249;1720_1782del
19 human 5991 RFX3 regulatory factor X3 XM_017015002.2 61.9% 60% (many diffs)
20 human 5991 RFX3 regulatory factor X3 XM_006716847.3 60.9% 60.6% (many diffs)
21 human 5991 RFX3 regulatory factor X3 NM_001282117.1 54.6% 53.1% (many diffs)
22 mouse 19726 Rfx3 regulatory factor X, 3 (inf... NM_001166414.1 92.4% 98.9% (many diffs)
23 mouse 19726 Rfx3 regulatory factor X, 3 (inf... NM_011265.3 92.4% 98.9% (many diffs)
24 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_006526782.3 92.4% 98.9% (many diffs)
25 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_011247169.2 92.4% 98.9% (many diffs)
26 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_006526780.3 91.2% 97.6% (many diffs)
27 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_006526778.3 89.3% 95.6% (many diffs)
28 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_011247167.2 89.3% 95.6% (many diffs)
29 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_006526784.3 89.2% 95.5% (many diffs)
30 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_017318087.1 88.8% 95% (many diffs)
31 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_017318086.1 87.6% 93.7% (many diffs)
32 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_011247168.2 86.2% 92.3% (many diffs)
33 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XM_006526785.3 63.9% 67.8% (many diffs)
34 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XR_877668.2 25.4% (many diffs)
35 mouse 19726 Rfx3 regulatory factor X, 3 (inf... XR_001782562.1 21.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2313
ORF length:
2247
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca gacatcagag actgggtcgg acacaggctc gacagtgacc ttacaaacat
121ctgtggctag tcaagcagca gtgcctacgc aggtggtaca gcaagtacca gtacaacaac
181aggtacagca ggtacagact gtgcagcagg tacaacatgt ctatcccgct caggtgcagt
241atgtggaagg aagcgatact gtctatacca atggagcaat ccgaacaaca acgtatcctt
301acacagagac acagatgtac agccaaaata ctggagggaa ttactttgat actcaaggga
361gttccgccca ggtgactacc gtggtctcat cccacagtat ggtgggcact ggtgggattc
421agatgggcgt cacaggagga caactcatca gcagctctgg aggaacctat ctgatcggca
481actcaatgga gaattctggt cactcagtga cacacacaac tcgggcctcc ccagcgacaa
541ttgaaatggc gattgagacg ctgcaaaagt ctgacggtct gtccactcac agaagctctc
601ttctcaacag ccatctccag tggctgttgg acaattatga gacagcagaa ggagtgagcc
661ttcccagaag cactctgtac aaccactacc ttcgacactg tcaggaacac aaactggacc
721cagtcaatgc tgcctctttt ggaaaattaa taagatcaat ttttatgggg ctacgaacca
781ggagattggg cactagagga aactccaaat accactacta tgggattcgt gtcaagccag
841attcccctct taatcgtctg caagaagaca tgcagtatat ggctatgaga caacaaccca
901tgcaacagaa acaaaggtac aagcctatgc agaaagtgga tggggttgca gatggtttca
961caggaagtgg tcaacagaca ggcacatctg ttgagcaaac tgtaattgcc caaagccaac
1021atcatcaaca gtttttagat gcatctcgag cacttccaga gtttggagaa gttgaaatct
1081cttctctgcc agatggtact acctttgagg atatcaagtc actgcagagt ctttatagag
1141agcactgtga ggcaatattg gacgttgttg tgaatcttca atttagcctg atagaaaaat
1201tgtggcaaac attctggcgc tattctccct ctactccaac tgatggcact accattaccg
1261aatcgagcaa tctgagtgaa atagaaagtc gacttccgaa agcaaagctg ataactctgt
1321gcaaacatga gtctatcctg aaatggatgt gtaactgtga ccatgggatg taccaggctt
1381tggtggagat tctcatcccc gacgtcctta gacctattcc tagtgccttg acccaagcca
1441ttcgaaattt tgcaaaaagc cttgaaggtt ggctttccaa tgccatgaac aatattccac
1501agagaatgat acaaaccaag gttgccgctg taagtgcctt tgcccagact ctgcgaagat
1561acacgtcgct taatcacctg gcccaggcag ctcgtgcagt gcttcagaac acttcccaaa
1621tcaaccagat gcttagtgac ctcaaccgtg tcgactttgc caatgtccag gagcaggctt
1681cctgggtgtg ccagtgtgat gacaacatgg ttcagagact agaaacagac ttcaagatga
1741ctcttcagca gcagagcacc ctggagcagt gggctgcgtg gcttgacaat gtgatgatgc
1801aagcactgaa accctatgaa ggaagaccca gttttcctaa agccgccagg cagtttctgc
1861taaaatggtc tttctacagc tcaatggtta ttcgggactt aaccttacgc agtgctgcta
1921gctttggctc cttccacctg atccgtctac tctacgacga atatatgttt tacttagtag
1981aacatcgtgt tgctcaggca acaggagaga ctcctatagc agtcatgggc gagtttggtg
2041atttaaatgc cgtgtctcct ggaaatctgg ataaagatga aggcagtgaa gtagaaagtg
2101aaatggatga agaactggat gactcttcag agcctcaagc caaaagagag aaaacagagc
2161tgagccaggc atttccagtg ggctgcatgc agcctgttct cgagactggc gtgcaaccaa
2221gcctcctgaa tccaattcac agcgagcaca ttgtcacaag tactcagact atcagacagt
2281gcagcgctac aggaaatacc tacactgcag tctacccaac tttcttgtac aaagtggttg
2341gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
2401accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)