Construct: ORF ccsbBroad304_02025

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012563.1_s304c1, BRDN0000408362
Derived from:
ccsbBroadEn_02025
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NRP2 (8828)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02025
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8828 NRP2 neuropilin 2 NM_003872.3 99.9% 100% 1404T>C
2 human 8828 NRP2 neuropilin 2 NM_201266.2 99.4% 99.4% 1404T>C;2424_2438del
3 human 8828 NRP2 neuropilin 2 NM_201279.2 98.1% 98.1% 1404T>C;2424_2425ins51
4 human 8828 NRP2 neuropilin 2 NM_018534.4 91.2% 87.9% (many diffs)
5 human 8828 NRP2 neuropilin 2 NM_201267.2 90.8% 88.4% (many diffs)
6 human 8828 NRP2 neuropilin 2 XM_017005188.2 89.1% 88% (many diffs)
7 human 8828 NRP2 neuropilin 2 XM_017005187.2 88.6% 87.5% (many diffs)
8 human 8828 NRP2 neuropilin 2 XR_923056.3 78.6% (many diffs)
9 human 8828 NRP2 neuropilin 2 XR_923057.3 77% (many diffs)
10 human 8828 NRP2 neuropilin 2 NM_201264.1 59.4% 59.5% (many diffs)
11 human 8828 NRP2 neuropilin 2 XR_923055.3 42.5% (many diffs)
12 mouse 18187 Nrp2 neuropilin 2 NM_001077404.1 89% 94.6% (many diffs)
13 mouse 18187 Nrp2 neuropilin 2 NM_001077403.1 88.5% 94% (many diffs)
14 mouse 18187 Nrp2 neuropilin 2 NM_010939.2 87.8% 93% (many diffs)
15 mouse 18187 Nrp2 neuropilin 2 NM_001077405.1 87.5% 93% (many diffs)
16 mouse 18187 Nrp2 neuropilin 2 NM_001077406.1 81.2% 83.7% (many diffs)
17 mouse 18187 Nrp2 neuropilin 2 NM_001077407.1 81.2% 84.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2847
ORF length:
2778
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggatatgttt cctctcacct gggttttctt agccctctac ttttcaagac
121accaagtgag aggccaacca gacccaccgt gcggaggtcg tttgaattcc aaagatgctg
181gctatatcac ctctcccggt tacccccagg actacccctc ccaccagaac tgcgagtgga
241ttgtttacgc ccccgaaccc aaccagaaga ttgtcctcaa cttcaaccct cactttgaaa
301tcgagaagca cgactgcaag tatgacttta tcgagattcg ggatggggac agtgaatccg
361cagacctcct gggcaaacac tgtgggaaca tcgccccgcc caccatcatc tcctcgggct
421ccatgctcta catcaagttc acctccgact acgcccggca gggggcaggc ttctctctgc
481gctacgagat cttcaagaca ggctctgaag attgctcaaa aaacttcaca agccccaacg
541ggaccatcga atctcctggg tttcctgaga agtatccaca caacttggac tgcaccttta
601ccatcctggc caaacccaag atggagatca tcctgcagtt cctgatcttt gacctggagc
661atgacccttt gcaggtggga gagggggact gcaagtacga ttggctggac atctgggatg
721gcattccaca tgttggcccc ctgattggca agtactgtgg gaccaaaaca ccctctgaac
781ttcgttcatc gacggggatc ctctccctga cctttcacac ggacatggcg gtggccaagg
841atggcttctc tgcgcgttac tacctggtcc accaagagcc actagagaac tttcagtgca
901atgttcctct gggcatggag tctggccgga ttgctaatga acagatcagt gcctcatcta
961cctactctga tgggaggtgg acccctcaac aaagccggct ccatggtgat gacaatggct
1021ggacccccaa cttggattcc aacaaggagt atctccaggt ggacctgcgc tttttaacca
1081tgctcacggc catcgcaaca cagggagcga tttccaggga aacacagaat ggctactatg
1141tcaaatccta caagctggaa gtcagcacta atggagagga ctggatggtg taccggcatg
1201gcaaaaacca caaggtattt caagccaaca acgatgcaac tgaggtggtt ctgaacaagc
1261tccacgctcc actgctgaca aggtttgtta gaatccgccc tcagacctgg cactcaggta
1321tcgccctccg gctggagctc ttcggctgcc gggtcacaga tgctccctgc tccaacatgc
1381tggggatgct ctcaggcctc attgcagact cccagatctc cgcctcttcc acccaggaat
1441acctctggag ccccagtgca gcccgcctgg tcagcagccg ctcgggctgg ttccctcgaa
1501tccctcaggc ccagcccggt gaggagtggc ttcaggtaga tctgggaaca cccaagacag
1561tgaaaggtgt catcatccag ggagcccgcg gaggagacag tatcactgct gtggaagcca
1621gagcatttgt gcgcaagttc aaagtctcct acagcctaaa cggcaaggac tgggaataca
1681ttcaggaccc caggacccag cagccaaagc tgttcgaagg gaacatgcac tatgacaccc
1741ctgacatccg aaggtttgac cccattccgg cacagtatgt gcgggtatac ccggagaggt
1801ggtcgccggc ggggattggg atgcggctgg aggtgctggg ctgtgactgg acagactcca
1861agcccacggt agagacgctg ggacccactg tgaagagcga agagacaacc accccctacc
1921ccaccgaaga ggaggccaca gagtgtgggg agaactgcag ctttgaggat gacaaagatt
1981tgcagctccc ttcgggattc aattgcaact tcgatttcct cgaggagccc tgtggttgga
2041tgtatgacca tgccaagtgg ctccggacca cctgggccag cagctccagc ccaaacgacc
2101ggacgtttcc agatgacagg aatttcttgc ggctgcagag tgacagccag agagagggcc
2161agtatgcccg gctcatcagc ccccctgtcc acctgccccg aagcccggtg tgcatggagt
2221tccagtacca ggccacgggc ggccgcgggg tggcgctgca ggtggtgcgg gaagccagcc
2281aggagagcaa gttgctgtgg gtcatccgtg aggaccaggg cggcgagtgg aagcacgggc
2341ggatcatcct gcccagctac gacatggagt accagattgt gttcgaggga gtgataggga
2401aaggacgttc cggagagatt gccattgatg acattcggat aagcactgat gtcccactgg
2461agaactgcat ggaacccatc tcggcttttg cagtggacat cccagaaata catgagagag
2521aaggatatga agatgaaatt gatgatgaat acgaggtgga ctggagcaat tcttcttctg
2581caacctcagg gtctggcgcc ccctcgaccg acaaagaaaa gagctggctg tacaccctgg
2641atcccatcct catcaccatc atcgccatga gctcactggg cgtcctcctg ggggccacct
2701gtgcaggcct cctgctctac tgcacctgtt cctactcggg cctgagctcc cgaagctgca
2761ccacactgga gaactacaac ttcgagctct acgatggcct taagcacaag gtcaagatga
2821accaccaaaa gtgctgctcc gaggcattgc caactttctt gtacaaagtg gttggtaagc
2881ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
2941ggcgcgttaa gtcgacaatc aacctctgga tta

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