Construct: ORF ccsbBroad304_02600

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003896.1_s304c1, BRDN0000399405
Derived from:
ccsbBroadEn_02600
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBPMS (11030)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02600
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11030 RBPMS RNA binding protein, mRNA p... NM_001008712.2 100% 100%
2 human 11030 RBPMS RNA binding protein, mRNA p... NM_001008711.3 86.4% 81.8% (many diffs)
3 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012984.2 85.2% 78.2% (many diffs)
4 human 11030 RBPMS RNA binding protein, mRNA p... NM_001008710.3 84.1% 79.5% (many diffs)
5 human 11030 RBPMS RNA binding protein, mRNA p... NM_006867.4 84.1% 79.5% (many diffs)
6 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012986.2 84.1% 79.5% (many diffs)
7 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012988.2 81.7% 80.3% (many diffs)
8 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012989.2 80.3% 80.3% 528_529ins129
9 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012982.2 78.9% 75.7% (many diffs)
10 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012981.2 78.6% 75.4% (many diffs)
11 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012980.2 73.5% 70.3% (many diffs)
12 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012987.2 73.2% 68.6% (many diffs)
13 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012990.2 68.7% 65% (many diffs)
14 human 11030 RBPMS RNA binding protein, mRNA p... XM_024447055.1 68.3% 64.3% (many diffs)
15 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012983.2 65.5% 62% (many diffs)
16 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012992.2 61.2% 60.7% (many diffs)
17 human 11030 RBPMS RNA binding protein, mRNA p... XM_024447054.1 51.7% 47.7% (many diffs)
18 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012985.2 48.4% 40.9% (many diffs)
19 human 11030 RBPMS RNA binding protein, mRNA p... XR_001745461.2 40.6% 1_552del;1081_1382del;1512_1615del
20 human 11030 RBPMS RNA binding protein, mRNA p... XM_017012991.2 35.7% 31.2% (many diffs)
21 human 11030 RBPMS RNA binding protein, mRNA p... XR_001745463.2 20.9% (many diffs)
22 human 11030 RBPMS RNA binding protein, mRNA p... XR_001745462.2 20.6% (many diffs)
23 human 11030 RBPMS RNA binding protein, mRNA p... XR_001745460.2 19.9% (many diffs)
24 mouse 19663 Rbpms RNA binding protein gene wi... NM_001042675.2 94.5% 99% (many diffs)
25 mouse 19663 Rbpms RNA binding protein gene wi... NM_001042674.2 81.1% 78.7% (many diffs)
26 mouse 19663 Rbpms RNA binding protein gene wi... NM_019733.3 81.1% 78.7% (many diffs)
27 mouse 19663 Rbpms RNA binding protein gene wi... XM_006509037.3 76.4% 69.9% (many diffs)
28 mouse 19663 Rbpms RNA binding protein gene wi... NM_001286168.1 70.3% 66.2% (many diffs)
29 mouse 19663 Rbpms RNA binding protein gene wi... XR_378781.2 60.7% (many diffs)
30 mouse 19663 Rbpms RNA binding protein gene wi... XR_378782.2 59.3% (many diffs)
31 mouse 19663 Rbpms RNA binding protein gene wi... XR_378780.2 53.7% (many diffs)
32 mouse 19663 Rbpms RNA binding protein gene wi... XR_378783.3 24.3% (many diffs)
33 mouse 19663 Rbpms RNA binding protein gene wi... XR_001778413.1 7.4% (many diffs)
34 mouse 19663 Rbpms RNA binding protein gene wi... XR_870205.1 7.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
723
ORF length:
657
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa caacggcggc aaagccgaga aggagaacac cccgagcgag gccaaccttc
121aggaggagga ggtccggacc ctatttgtca gtggccttcc tctggatatc aaacctcggg
181agctctatct gcttttcaga ccatttaagg gctatgaggg ttctcttata aagctcacat
241ctaaacagcc tgtaggtttt gtcagttttg acagtcgctc agaagcagag gctgcaaaga
301atgctttgaa tggcatccgc ttcgatcctg aaattccgca aacactacga ctagagtttg
361ctaaggcaaa cacgaagatg gccaagaaca aactcgtagg gactccaaac cccagtactc
421ctctgcccaa cactgtacct cagttcattg ccagagagcc atatgagctc acagtgcctg
481cactttaccc cagtagccct gaagtgtggg ccccgtaccc tctgtaccca gcggagttag
541cgcctgctct acctcctcct gctttcacct atcccgcttc actgcatgcc cagtgtttct
601ctcctgaggc aaagcccaac acacctgtct tttgtccact tctccagcaa attagatttg
661tctctgggaa tgtgtttgta acataccaac ctactgcaga ccagcagagg gagctcccat
721gttgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
781tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
841tctggatta

Download FASTA (ORF) (Full)