Construct: ORF ccsbBroadEn_02600
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003896.1_s300c1, BRDN0000385666
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RBPMS (11030)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | NM_001008712.2 | 100% | 100% | |
| 2 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | NM_001008711.3 | 86.4% | 81.8% | (many diffs) |
| 3 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012984.2 | 85.2% | 78.2% | (many diffs) |
| 4 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | NM_001008710.3 | 84.1% | 79.5% | (many diffs) |
| 5 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | NM_006867.4 | 84.1% | 79.5% | (many diffs) |
| 6 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012986.2 | 84.1% | 79.5% | (many diffs) |
| 7 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012988.2 | 81.7% | 80.3% | (many diffs) |
| 8 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012989.2 | 80.3% | 80.3% | 528_529ins129 |
| 9 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012982.2 | 78.9% | 75.7% | (many diffs) |
| 10 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012981.2 | 78.6% | 75.4% | (many diffs) |
| 11 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012980.2 | 73.5% | 70.3% | (many diffs) |
| 12 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012987.2 | 73.2% | 68.6% | (many diffs) |
| 13 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012990.2 | 68.7% | 65% | (many diffs) |
| 14 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_024447055.1 | 68.3% | 64.3% | (many diffs) |
| 15 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012983.2 | 65.5% | 62% | (many diffs) |
| 16 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012992.2 | 61.2% | 60.7% | (many diffs) |
| 17 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_024447054.1 | 51.7% | 47.7% | (many diffs) |
| 18 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012985.2 | 48.4% | 40.9% | (many diffs) |
| 19 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XR_001745461.2 | 40.6% | 1_552del;1081_1382del;1512_1615del | |
| 20 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XM_017012991.2 | 35.7% | 31.2% | (many diffs) |
| 21 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XR_001745463.2 | 20.9% | (many diffs) | |
| 22 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XR_001745462.2 | 20.6% | (many diffs) | |
| 23 | human | 11030 | RBPMS | RNA binding protein, mRNA p... | XR_001745460.2 | 19.9% | (many diffs) | |
| 24 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | NM_001042675.2 | 94.5% | 99% | (many diffs) |
| 25 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | NM_001042674.2 | 81.1% | 78.7% | (many diffs) |
| 26 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | NM_019733.3 | 81.1% | 78.7% | (many diffs) |
| 27 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | XM_006509037.3 | 76.4% | 69.9% | (many diffs) |
| 28 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | NM_001286168.1 | 70.3% | 66.2% | (many diffs) |
| 29 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | XR_378781.2 | 60.7% | (many diffs) | |
| 30 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | XR_378782.2 | 59.3% | (many diffs) | |
| 31 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | XR_378780.2 | 53.7% | (many diffs) | |
| 32 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | XR_378783.3 | 24.3% | (many diffs) | |
| 33 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | XR_001778413.1 | 7.4% | (many diffs) | |
| 34 | mouse | 19663 | Rbpms | RNA binding protein gene wi... | XR_870205.1 | 7.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 723
- ORF length:
- 657
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CAACGGCGGC AAAGCCGAGA AGGAGAACAC CCCGAGCGAG GCCAACCTTC 121 AGGAGGAGGA GGTCCGGACC CTATTTGTCA GTGGCCTTCC TCTGGATATC AAACCTCGGG 181 AGCTCTATCT GCTTTTCAGA CCATTTAAGG GCTATGAGGG TTCTCTTATA AAGCTCACAT 241 CTAAACAGCC TGTAGGTTTT GTCAGTTTTG ACAGTCGCTC AGAAGCAGAG GCTGCAAAGA 301 ATGCTTTGAA TGGCATCCGC TTCGATCCTG AAATTCCGCA AACACTACGA CTAGAGTTTG 361 CTAAGGCAAA CACGAAGATG GCCAAGAACA AACTCGTAGG GACTCCAAAC CCCAGTACTC 421 CTCTGCCCAA CACTGTACCT CAGTTCATTG CCAGAGAGCC ATATGAGCTC ACAGTGCCTG 481 CACTTTACCC CAGTAGCCCT GAAGTGTGGG CCCCGTACCC TCTGTACCCA GCGGAGTTAG 541 CGCCTGCTCT ACCTCCTCCT GCTTTCACCT ATCCCGCTTC ACTGCATGCC CAGTGTTTCT 601 CTCCTGAGGC AAAGCCCAAC ACACCTGTCT TTTGTCCACT TCTCCAGCAA ATTAGATTTG 661 TCTCTGGGAA TGTGTTTGTA ACATACCAAC CTACTGCAGA CCAGCAGAGG GAGCTCCCAT 721 GTTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 781 gcaacgaac