Construct: ORF ccsbBroad304_02633

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018331.1_s304c1, BRDN0000398688
Derived from:
ccsbBroadEn_02633
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LSM6 (11157)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02633
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11157 LSM6 LSM6 homolog, U6 small nucl... NM_007080.3 100% 100%
2 human 11157 LSM6 LSM6 homolog, U6 small nucl... XM_017007672.1 100% 100%
3 human 11157 LSM6 LSM6 homolog, U6 small nucl... XM_017007673.1 100% 100%
4 human 11157 LSM6 LSM6 homolog, U6 small nucl... XR_001741098.1 27.4% 1_119del;360_874del
5 human 11157 LSM6 LSM6 homolog, U6 small nucl... XR_001741100.1 8.6% 1_119del;360_2771del
6 human 11157 LSM6 LSM6 homolog, U6 small nucl... XR_001741099.1 8.4% 1_119del;360_2830del
7 mouse 78651 Lsm6 LSM6 homolog, U6 small nucl... NM_001191004.1 92% 100% (many diffs)
8 mouse 78651 Lsm6 LSM6 homolog, U6 small nucl... NM_030145.3 92% 100% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
306
ORF length:
240
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag tcttcggaag caaaccccta gtgacttctt aaagcaaatc atcggacgac
121cagttgtggt aaaattaaat tctggagtgg attatcgagg ggtcctggct tgcctggatg
181gctacatgaa tatagccctg gagcagacag aagaatatgt aaatggacaa ctgaagaata
241agtatgggga tgcatttatc cgaggaaaca atgtgttgta catcagtaca cagaagagac
301ggatgtgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
361gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
421acctctggat ta

Download FASTA (ORF) (Full)