Construct: ORF ccsbBroad304_02686

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008695.1_s304c1, BRDN0000406978
Derived from:
ccsbBroadEn_02686
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COPZ1 (22818)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02686
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22818 COPZ1 COPI coat complex subunit z... NM_016057.3 100% 100%
2 human 22818 COPZ1 COPI coat complex subunit z... NM_001271736.2 95.1% 92.9% (many diffs)
3 human 22818 COPZ1 COPI coat complex subunit z... NM_001271735.2 90.3% 90.3% 434_435ins51
4 human 22818 COPZ1 COPI coat complex subunit z... NM_001271734.2 87% 87% 17_18ins69
5 human 22818 COPZ1 COPI coat complex subunit z... NR_073424.2 23.2% 1_33del;202_203ins92;473_1798del
6 human 22818 COPZ1 COPI coat complex subunit z... XR_002957300.1 14.7% (many diffs)
7 mouse 56447 Copz1 coatomer protein complex, s... NM_019817.1 93.2% 100% (many diffs)
8 mouse 56447 Copz1 coatomer protein complex, s... XM_006521211.2 83.9% 87.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
597
ORF length:
531
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggcgctgatt ttggaacctt ccctgtatac tgtcaaagcc atcctgattc
121tggacaatga tggagatcga ctttttgcca agtactatga cgacacctac cccagtgtca
181aggagcaaaa ggcctttgag aagaacattt tcaacaagac ccatcggact gacagtgaaa
241ttgccctctt ggaaggcctg acagtggtat acaaaagcag tatagatctc tatttctatg
301tgattggcag ctcctatgaa aatgagctga tgcttatggc tgttctgaac tgtctcttcg
361actcattgag ccagatgctg aggaaaaatg tagaaaagcg agcactgctg gagaacatgg
421aggggctgtt cttggctgtg gatgaaattg tagatggagg ggtgatccta gagagtgatc
481cccagcaggt ggtacaccgg gtggcattaa ggggtgaaga tgtccccctt acggagcaga
541ccgtgtctca ggtgctgcag tcagccaaag aacagatcaa gtggtcactc cttcggtgcc
601caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
661ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
721tta

Download FASTA (ORF) (Full)