Construct: ORF ccsbBroad304_02746

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001267.1_s304c1, BRDN0000410312
Derived from:
ccsbBroadEn_02746
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXW11 (23291)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02746
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23291 FBXW11 F-box and WD repeat domain ... NM_033644.2 100% 100%
2 human 23291 FBXW11 F-box and WD repeat domain ... XM_005265856.2 98.1% 97.3% (many diffs)
3 human 23291 FBXW11 F-box and WD repeat domain ... XM_005265857.2 97.3% 97.3% 0_1ins42
4 human 23291 FBXW11 F-box and WD repeat domain ... XM_005265858.3 96.4% 96.4% 0_1ins57
5 human 23291 FBXW11 F-box and WD repeat domain ... XM_017009280.2 96.4% 96.4% 0_1ins57
6 human 23291 FBXW11 F-box and WD repeat domain ... XM_017009279.1 96.2% 95.2% (many diffs)
7 human 23291 FBXW11 F-box and WD repeat domain ... NM_033645.2 96% 96% 44_45ins63
8 human 23291 FBXW11 F-box and WD repeat domain ... NM_012300.2 95.6% 92.7% (many diffs)
9 human 23291 FBXW11 F-box and WD repeat domain ... XM_017009281.2 95.1% 93.9% (many diffs)
10 human 23291 FBXW11 F-box and WD repeat domain ... XM_005265855.5 93.9% 93.9% 45_146del
11 mouse 103583 Fbxw11 F-box and WD-40 domain prot... NM_001271348.1 91.9% 99.2% (many diffs)
12 mouse 103583 Fbxw11 F-box and WD-40 domain prot... XM_006514433.2 90.2% 96.6% (many diffs)
13 mouse 103583 Fbxw11 F-box and WD-40 domain prot... XM_006514434.3 88.4% 95.6% (many diffs)
14 mouse 103583 Fbxw11 F-box and WD-40 domain prot... NM_001271349.1 88.1% 95.6% (many diffs)
15 mouse 103583 Fbxw11 F-box and WD-40 domain prot... NM_001271347.1 88% 92.4% (many diffs)
16 mouse 103583 Fbxw11 F-box and WD-40 domain prot... XM_006514435.2 87.3% 93.5% (many diffs)
17 mouse 103583 Fbxw11 F-box and WD-40 domain prot... NM_134015.3 86.4% 93.2% (many diffs)
18 mouse 103583 Fbxw11 F-box and WD-40 domain prot... XM_006514436.3 77.1% 83.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1653
ORF length:
1587
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gcccgactcg gtgattgagg acaagaccat cgagctcatg aacacttcag
121ttatggaaga tcaaaatgaa gatgagtccc caaagaaaaa tactctttgg cagataagta
181atggaacatc atctgtgatc gtctccagaa agaggccatc agaaggaaac tatcaaaaag
241aaaaagactt gtgtattaaa tattttgacc agtggtctga atcagatcaa gtggaatttg
301tggaacatct tatttcacga atgtgtcatt atcagcatgg acatattaac tcttacctga
361agcccatgtt gcagcgggac tttattaccg ctttaccaga gcaaggctta gatcacatag
421cagaaaacat tctttcgtac ctggatgcca ggtctctgtg tgcagcagag ctggtatgta
481aagaatggca gcgagtgatc tcagaaggaa tgctttggaa gaagctgatt gaacgaatgg
541tacgcactga tcccctatgg aaaggacttt cagaaagaag agggtgggat cagtacctgt
601ttaaaaacag acccacagat ggccctccaa attcatttta taggtcatta tacccaaaga
661ttatccagga tatagagact atagaatcta actggcggtg tggacgacac aacttgcaga
721ggattcagtg ccgctctgaa aatagtaaag gtgtctactg tttacagtac gatgatgaaa
781aaattatcag tggcctacga gataattcta ttaagatatg ggataaaacc agcctggaat
841gtttgaaagt gttaacagga cacacaggct ctgtcctctg tctgcagtat gatgagcgtg
901tcattgtaac tggctcttca gattctacgg tgagagtgtg ggatgtgaac acgggtgaag
961ttcttaacac attgatccac cacaatgagg ctgtattgca cttacgcttc agcaatggac
1021tgatggtgac ctgttccaag gaccgctcca ttgctgtgtg ggacatggct tctgcgaccg
1081acatcacttt acgccgtgtc ctggttggcc accgggctgc cgtcaatgta gtagactttg
1141acgacaagta catcgtgtct gcctctggtg acaggaccat caaagtctgg agcacgagca
1201cctgtgaatt tgttcgtact ctcaatgggc acaagcgggg cattgcctgt ctccagtaca
1261gggatcgcct ggttgttagt ggatcatcag ataataccat taggctctgg gatattgaat
1321gtggtgcctg tttaagagtc ctagagggac atgaagaatt ggtccgatgc atccggtttg
1381ataacaagag gattgtcagt ggggcctatg atgggaaaat taaagtttgg gacttgcaag
1441ctgctcttga ccctcgagcc ccagcaagca cattgtgttt gcgcacattg gtggaacatt
1501ctggacgtgt gtttcggctc cagtttgatg agtttcagat catcagcagc tcccatgatg
1561acactatttt gatttgggat ttcttaaatg tgcctcccag tgcccagaat gagacccgtt
1621ctccctccag aacatacact tacatctcta gatacccaac tttcttgtac aaagtggttg
1681gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1741accggtggcg cgttaagtcg acaatcaacc tctggatta

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