Construct: ORF ccsbBroad304_02797

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008946.1_s304c1, BRDN0000406231
Derived from:
ccsbBroadEn_02797
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF346 (23567)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02797
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23567 ZNF346 zinc finger protein 346 NM_012279.4 100% 100%
2 human 23567 ZNF346 zinc finger protein 346 XM_017009295.2 100% 100%
3 human 23567 ZNF346 zinc finger protein 346 XM_017009296.2 100% 100%
4 human 23567 ZNF346 zinc finger protein 346 NM_001363713.1 94.8% 94.8% 516_563del
5 human 23567 ZNF346 zinc finger protein 346 NM_001308213.1 92.1% 92.1% 175_249del
6 human 23567 ZNF346 zinc finger protein 346 NM_001308214.2 89.1% 89.1% 277_278ins96
7 human 23567 ZNF346 zinc finger protein 346 XM_005265860.2 87.7% 87.7% 175_249del;591_638del
8 human 23567 ZNF346 zinc finger protein 346 XM_011534493.1 87.7% 87.7% 175_249del;591_638del
9 human 23567 ZNF346 zinc finger protein 346 XM_017009299.2 85.4% 82.9% 703_704ins94;789_828del
10 human 23567 ZNF346 zinc finger protein 346 XM_017009297.2 81.2% 78.7% 516_563del;751_752ins94;837_876del
11 human 23567 ZNF346 zinc finger protein 346 XM_017009300.1 79.9% 76.4% (many diffs)
12 human 23567 ZNF346 zinc finger protein 346 XM_011534496.2 79% 76.4% 175_249del;778_779ins94;864_903del
13 human 23567 ZNF346 zinc finger protein 346 NM_001308215.2 78.9% 78.9% 515_516ins186
14 human 23567 ZNF346 zinc finger protein 346 XM_017009301.2 78.9% 78.9% 515_516ins186
15 human 23567 ZNF346 zinc finger protein 346 XM_011534495.3 76.2% 64.9% (many diffs)
16 human 23567 ZNF346 zinc finger protein 346 XM_011534494.1 75.4% 71.5% (many diffs)
17 human 23567 ZNF346 zinc finger protein 346 XM_005265864.3 72.7% 72.7% 175_249del;590_591ins186
18 human 23567 ZNF346 zinc finger protein 346 XM_017009298.1 71.8% 70.7% (many diffs)
19 human 23567 ZNF346 zinc finger protein 346 XM_017009302.1 70.4% 63.6% (many diffs)
20 human 23567 ZNF346 zinc finger protein 346 NM_001308218.2 66% 63.2% (many diffs)
21 human 23567 ZNF346 zinc finger protein 346 NM_001308216.2 60.1% 42.9% (many diffs)
22 human 23567 ZNF346 zinc finger protein 346 NM_001308219.1 57.5% 39.2% (many diffs)
23 human 23567 ZNF346 zinc finger protein 346 XM_017009303.1 55.1% 54.8% 0_1ins367;2_3insCA;147_194del
24 human 23567 ZNF346 zinc finger protein 346 XM_011534497.2 43.7% 38.6% (many diffs)
25 human 23567 ZNF346 zinc finger protein 346 NM_001308221.2 40.1% 40.1% 173_174ins528
26 human 23567 ZNF346 zinc finger protein 346 NM_001308223.1 40.1% 40.1% 173_174ins528
27 human 23567 ZNF346 zinc finger protein 346 NR_131773.2 17% 1_43del;413_414ins145;781_4169del
28 human 23567 ZNF346 zinc finger protein 346 NR_131774.2 12.7% 1_43del;412_413ins331;595_3983del
29 mouse 26919 Zfp346 zinc finger protein 346 NM_012017.2 88.2% 84% (many diffs)
30 mouse 26919 Zfp346 zinc finger protein 346 XM_006517259.3 80.6% 76.7% (many diffs)
31 mouse 26919 Zfp346 zinc finger protein 346 XM_006517260.3 66.4% 63% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
948
ORF length:
882
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gtatcccgcg ccggccacgg tgcaggccgc ggacggcgga gcggccgggc
121cttacagcag ctcggagttg ctggagggcc aggagccgga cggggtgcgc tttgaccgcg
181agagggcgcg ccgcctgtgg gaagccgtgt ccggtgccca gccggtgggt agagaggaag
241tggagcacat gatccagaag aaccaatgtc tcttcaccaa cacccagtgt aaggtttgct
301gcgccttgct tatttctgag tcccagaagc tggcacatta ccagagcaaa aaacatgcca
361acaaagtgaa gagataccta gcaatccatg gaatggagac attaaagggg gaaacgaaga
421agctagactc agatcagaag agcagcagaa gcaaagacaa gaaccagtgc tgccccatct
481gtaacatgac cttttcctcc cctgtcgtgg cccagtcgca ctacctgggg aagacccacg
541caaagaactt aaagctgaag cagcagtcca ctaaggtgga agccttgcac cagaatagag
601agatgataga cccagacaag ttctgcagcc tctgccatgc aactttcaac gaccctgtca
661tggctcaaca acattatgtg ggcaagaaac acagaaaaca ggagaccaag ctcaaactaa
721tggcacgcta tgggcggctg gcggaccctg ctgtcactga ctttccagct ggaaagggct
781acccctgcaa aacatgtaag atagtgctga actccataga acagtaccaa gctcatgtca
841gcggcttcaa acacaagaac cagtcaccaa aaacagtggc atcatccctg ggccagattc
901caatgcaaag gcaacccatt cagaaagact caaccacctt ggaagactac ccaactttct
961tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
1021aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)

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