Construct: ORF ccsbBroad304_02880

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011959.1_s304c1, BRDN0000462024
Derived from:
ccsbBroadEn_02880
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PAMR1 (25891)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02880
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25891 PAMR1 peptidase domain containing... NM_015430.4 100% 100%
2 human 25891 PAMR1 peptidase domain containing... NM_001001991.3 97.6% 97.6% 820_821ins51
3 human 25891 PAMR1 peptidase domain containing... NM_001282675.1 92.2% 92.2% 0_1ins120;700_701ins51
4 human 25891 PAMR1 peptidase domain containing... NM_001282676.1 82.6% 82.4% 379_380ins333;487_488ins51
5 mouse 210622 Pamr1 peptidase domain containing... NM_173749.4 84.2% 88.1% (many diffs)
6 mouse 210622 Pamr1 peptidase domain containing... XR_001781792.1 40.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2280
ORF length:
2211
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggagctgggt tgctggacgc agttggggct cacttttctt cagctccttc
121tcatctcgtc cttgccaaga gagtacacag tcattaatga agcctgccct ggagcagagt
181ggaatatcat gtgtcgggag tgctgtgaat atgatcagat tgagtgcgtc tgccccggaa
241agagggaagt cgtgggttat accatccctt gctgcaggaa tgaggagaat gagtgtgact
301cctgcctgat ccacccaggt tgtaccatct ttgaaaactg caagagctgc cgaaatggct
361catggggggg taccttggat gacttctatg tgaaggggtt ctactgtgca gagtgccgag
421caggctggta cggaggagac tgcatgcgat gtggccaggt tctgcgagcc ccaaagggtc
481agattttgtt ggaaagctat cccctaaatg ctcactgtga atggaccatt catgctaaac
541ctgggtttgt catccaacta agatttgtca tgttgagcct ggagtttgac tacatgtgcc
601agtatgacta tgttgaggtt cgtgatggag acaaccgcga tggccagatc atcaagcgtg
661tctgtggcaa cgagcggcca gctcctatcc agagcatagg atcctcactc cacgtcctct
721tccactccga tggctccaag aattttgacg gtttccatgc catttatgag gagatcacag
781catgctcctc atccccttgt ttccatgacg gcacgtgcgt ccttgacaag gctggatctt
841acaagtgtgc ctgcttggca ggctatactg ggcagcgctg tgaaaatctt ctggaggctg
901ggaagtccaa gatcaaggcg tcagaagatt cattgtctgt ccttgaagaa agaaactgct
961cagaccctgg gggcccagtc aatgggtacc agaaaataac agggggccct gggcttatca
1021acggacgcca tgctaaaatt ggcaccgtgg tgtctttctt ttgtaacaac tcctatgttc
1081ttagtggcaa tgagaaaaga acttgccagc agaatggaga gtggtcaggg aaacagccca
1141tctgcataaa agcctgccga gaaccaaaga tttcagacct ggtgagaagg agagttcttc
1201cgatgcaggt tcagtcaagg gagacaccat tacaccagct atactcagcg gccttcagca
1261agcagaaact gcagagtgcc cctaccaaga agccagccct tccctttgga gatctgccca
1321tgggatacca acatctgcat acccagctcc agtatgagtg catctcaccc ttctaccgcc
1381gcctgggcag cagcaggagg acatgtctga ggactgggaa gtggagtggg cgggcaccat
1441cctgcatccc tatctgcggg aaaattgaga acatcactgc tccaaagacc caagggttgc
1501gctggccgtg gcaggcagcc atctacagga ggaccagcgg ggtgcatgac ggcagcctac
1561acaagggagc gtggttccta gtctgcagcg gtgccctggt gaatgagcgc actgtggtgg
1621tggctgccca ctgtgttact gacctgggga aggtcaccat gatcaagaca gcagacctga
1681aagttgtttt ggggaaattc taccgggatg atgaccggga tgagaagacc atccagagcc
1741tacagatttc tgctatcatt ctgcatccca actatgaccc catcctgctt gatgctgaca
1801tcgccatcct gaagctccta gacaaggccc gtatcagcac ccgagtccag cccatctgcc
1861tcgctgccag tcgggatctc agcacttcct tccaggagtc ccacatcact gtggctggct
1921ggaatgtcct ggcagacgtg aggagccctg gcttcaagaa cgacacactg cgctctgggg
1981tggtcagtgt ggtggactcg ctgctgtgtg aggagcagca tgaggaccat ggcatcccag
2041tgagtgtcac tgataacatg ttctgtgcca gctgggaacc cactgcccct tctgatatct
2101gcactgcaga gacaggaggc atcgcggctg tgtccttccc gggacgagca tctcctgagc
2161cacgctggca tctgatggga ctggtcagct ggagctatga taaaacatgc agccacaggc
2221tctccactgc cttcaccaag gtgctgcctt ttaaagactg gattgaaaga aatatgaaat
2281tgccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
2341attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
2401ggatta

Download FASTA (ORF) (Full)