Construct: ORF ccsbBroad304_03024

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001383.1_s304c1, BRDN0000404618
Derived from:
ccsbBroadEn_03024
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF544 (27300)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03024
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27300 ZNF544 zinc finger protein 544 NM_001320767.1 100% 100%
2 human 27300 ZNF544 zinc finger protein 544 NM_001320769.1 100% 100%
3 human 27300 ZNF544 zinc finger protein 544 NM_014480.3 100% 100%
4 human 27300 ZNF544 zinc finger protein 544 NM_001320770.1 96% 96% 159_160ins84
5 human 27300 ZNF544 zinc finger protein 544 NM_001320771.1 96% 96% 159_160ins84
6 human 27300 ZNF544 zinc finger protein 544 NM_001320773.1 96% 96% 159_160ins84
7 human 27300 ZNF544 zinc finger protein 544 XM_011526738.2 92.9% 92.9% 1_162del
8 human 27300 ZNF544 zinc finger protein 544 XM_024451453.1 80.1% 80.1% 0_1ins426
9 human 27300 ZNF544 zinc finger protein 544 NM_001320774.2 67.1% 67.1% 242_243ins705
10 human 27300 ZNF544 zinc finger protein 544 NM_001320780.2 16.1% 12.5% (many diffs)
11 human 27300 ZNF544 zinc finger protein 544 XM_017026599.1 15% 11.6% (many diffs)
12 human 27300 ZNF544 zinc finger protein 544 XM_017026600.1 13.5% 8.4% (many diffs)
13 human 27300 ZNF544 zinc finger protein 544 NM_001320782.1 13% 11.4% (many diffs)
14 human 27300 ZNF544 zinc finger protein 544 NM_001320783.2 12.5% 7.9% (many diffs)
15 human 27300 ZNF544 zinc finger protein 544 NM_001320776.2 11.6% 7.4% (many diffs)
16 human 27300 ZNF544 zinc finger protein 544 NM_001320788.1 10.4% 7.7% 159_160ins35;225_226ins1885
17 human 27300 ZNF544 zinc finger protein 544 NM_001320789.1 10.4% 7.7% 159_160ins35;225_226ins1885
18 human 27300 ZNF544 zinc finger protein 544 NM_001320791.1 10.4% 7.7% 159_160ins35;225_226ins1885
19 human 27300 ZNF544 zinc finger protein 544 NM_001320792.1 10.4% 7.7% 159_160ins35;225_226ins1885
20 human 27300 ZNF544 zinc finger protein 544 XM_017026601.1 10.4% 7.1% (many diffs)
21 human 27300 ZNF544 zinc finger protein 544 NM_001320785.2 10.4% 8% (many diffs)
22 human 27300 ZNF544 zinc finger protein 544 NM_001320786.2 10.4% 8% (many diffs)
23 human 27300 ZNF544 zinc finger protein 544 NM_001320787.2 10.4% 8% (many diffs)
24 human 27300 ZNF544 zinc finger protein 544 NM_001320781.1 9.7% 7.2% 1_162del;321_322ins35;387_388ins1885
25 human 27300 ZNF544 zinc finger protein 544 XM_017026603.1 9.7% 7.2% 1_162del;321_322ins35;387_388ins1885
26 human 27300 ZNF544 zinc finger protein 544 NM_001320777.2 9.7% 7.4% (many diffs)
27 human 27300 ZNF544 zinc finger protein 544 XM_017026602.1 9.5% 7.3% (many diffs)
28 human 27300 ZNF544 zinc finger protein 544 XM_017026604.1 9.3% 7.1% (many diffs)
29 human 27300 ZNF544 zinc finger protein 544 XM_017026605.1 9% 6.9% 1_162del;321_322ins35;372_372delGins1901
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2211
ORF length:
2145
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga agcacgttct atgctggttc caccccaggc atctgtgtgc ttcgaggatg
121tggctatggc attcacacag gaggagtggg aacagctgga cctggcccag aggacactgt
181accgagaggt gacactggag acctgggagc atattgtctc cctggggctt ttcctttcca
241aatctgatgt gatctctcag ctggagcaag aagaggacct gtgcagggca gagcaggagg
301ccccccgaga ctggaaagct acccttgagg agaataggtt gaattctgaa aaagatcgag
361ctagggaaga actatcccac cacgtggaag tgtacaggag tggaccggag gagccaccct
421ctttggtatt aggaaaagtg caagatcaga gcaaccagtt aagggaacac caggagaact
481ccttgaggtt catggtactc acctcagaga gactgtttgc tcaaagggaa cattgtgagc
541ttgaacttgg gggaggttat tctctacctt ctactttaag ccttctacct acaacattac
601ctacaagtac aggtttccct aagcccaact cacaagttaa agagttgaaa caaaattcag
661ctttcattaa tcatgagaaa aatggagcag atgggaagca ctgtgagagt catcagtgtg
721ctagagcttt ctgtcagagt atttacttga gtaaacttgg aaacgttgaa acaggaaaga
781aaaaccctta tgaatatatt gtcagtggtg actctctcaa ctatggttcc tccctttgtt
841ttcatggtag aactttttca gtgaagaaaa gtgatgactg taaggattat ggaaacctct
901tcagtcacag tgtgtctctg aatgaacaga agccagtgca ttttgggaaa agtcagtatg
961agtgtgatga gtgcagggaa acctgttctg agagtctgtg ccttgtacaa acagaaagaa
1021gtggccctgg agagaccccc ttcagatgtg aggaacgctg tgctgccttc cccatggcct
1081catctttttc tgactgtaac atcattcaga ctacagagaa gccatctgtg tgtaatcagt
1141gtggaaaatc tttcagctgt tgtaagctca tacaccagag aacacacact ggagaaaagc
1201ccttcgaatg tactcagtgt gggaaatctt ttagccagag ctatgacctt gtcatacatc
1261agaggacaca cactggagag aagccctatg agtgtgacct gtgtgggaaa tccttcaccc
1321agagatccaa acttattaca catcagcgaa ttcacactgg agaaaaaccg tatcagtgta
1381ttgaatgcag aaaatccttc aggtggaact ctaacctcat tgtacatcag agaattcata
1441ctggagagaa accgtatgag tgcactcact gtggaaagtc cttcagccaa agctatgagt
1501tagttacaca taaaagaacg cacactggag aaaaaccctt caaatgtact cagtgtggga
1561aatctttcag ccagaagtat gaccttgttg tacatcagag gacacacact ggagagaagc
1621cctatgagtg caacctgtgt gggaaatcct tctcccagag ttccaaactt attacgcatc
1681agcgaattca cactggagaa aaaccgtatc agtgtattga atgtgggaaa tccttcagat
1741ggaactctaa cctcgtcata catcagagaa ttcatactgg agagaaaccg tacgattgca
1801ctcactgtgg aaagtccttc agccaaagct atcagttagt tgcacataaa agaactcaca
1861ctggagaaaa gccctatgaa tgtaacgagt gtggaaaagc cttcaatcga agcactcagc
1921tcatcaggca tctgcaaatt cacactgggg agaagccgta caaatgcaat cagtgcaata
1981aagcctttgc aaggagctcc taccttgtga tgcatcagag aactcacact ggtgagaaac
2041cttttgagtg tagtcagtgt gggaaagcct tttcagggag ctctaacctt ctttcccatc
2101acagaattca ttctggagag aaaccctatg aatgtagtga ctgtgggaaa tccttccggc
2161agcaatctca acttgtagtg catcggcgga cacatactgg agagaaacct tacccaactt
2221tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
2281agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)