Transcript: Human XM_017026605.1

PREDICTED: Homo sapiens zinc finger protein 544 (ZNF544), transcript variant X10, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF544 (27300)
Length:
880
CDS:
449..823

Additional Resources:

NCBI RefSeq record:
XM_017026605.1
NBCI Gene record:
ZNF544 (27300)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026605.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

No results found.

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026605.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15794 pDONR223 0% 43.7% 32.7% None 1_162del;321_322ins35;372_373ins73 n/a
2 ccsbBroad304_15794 pLX_304 0% 43.7% 32.7% V5 1_162del;321_322ins35;372_373ins73 n/a
3 TRCN0000473123 AGGAAAGAGTACTACGAAAGAAGG pLX_317 100% 43.7% 32.7% V5 1_162del;321_322ins35;372_373ins73 n/a
4 ccsbBroadEn_03024 pDONR223 100% 9% 6.9% None 1_162del;321_322ins35;372_372delGins1901 n/a
5 ccsbBroad304_03024 pLX_304 0% 9% 6.9% V5 1_162del;321_322ins35;372_372delGins1901 n/a
6 TRCN0000472585 CGCTCACCAGCAGTCCTTAGGCTT pLX_317 18.2% 9% 6.9% V5 1_162del;321_322ins35;372_372delGins1901 n/a
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