Construct: ORF ccsbBroad304_03237

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012013.1_s304c1, BRDN0000410754
Derived from:
ccsbBroadEn_03237
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LEF1 (51176)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03237
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51176 LEF1 lymphoid enhancer binding f... NM_016269.5 100% 100%
2 human 51176 LEF1 lymphoid enhancer binding f... XM_005263046.3 94.1% 94.2% (many diffs)
3 human 51176 LEF1 lymphoid enhancer binding f... NM_001130713.2 92.9% 92.9% 637_638ins84
4 human 51176 LEF1 lymphoid enhancer binding f... NM_001130714.2 87.4% 87.4% (many diffs)
5 human 51176 LEF1 lymphoid enhancer binding f... XM_005263047.1 77.7% 77.3% (many diffs)
6 human 51176 LEF1 lymphoid enhancer binding f... NM_001166119.1 75.8% 75.4% (many diffs)
7 human 51176 LEF1 lymphoid enhancer binding f... XM_005263048.1 71% 70.6% (many diffs)
8 human 51176 LEF1 lymphoid enhancer binding f... XM_006714233.1 66.6% 66.5% (many diffs)
9 mouse 16842 Lef1 lymphoid enhancer binding f... NM_010703.4 91.3% 97.2% (many diffs)
10 mouse 16842 Lef1 lymphoid enhancer binding f... XM_006501068.3 86.2% 91.5% (many diffs)
11 mouse 16842 Lef1 lymphoid enhancer binding f... XM_006501069.2 84.4% 90.4% (many diffs)
12 mouse 16842 Lef1 lymphoid enhancer binding f... NM_001276402.1 79.7% 85% (many diffs)
13 mouse 16842 Lef1 lymphoid enhancer binding f... NM_001276403.1 75.9% 79.9% (many diffs)
14 mouse 16842 Lef1 lymphoid enhancer binding f... XM_006501070.3 71.6% 74.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1263
ORF length:
1197
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc ccaactctcc ggaggaggtg gcggcggcgg gggggacccg gaactctgcg
121ccacggacga gatgatcccc ttcaaggacg agggcgatcc tcagaaggaa aagatcttcg
181ccgagatcag tcatcccgaa gaggaaggcg atttagctga catcaagtct tccttggtga
241acgagtctga aatcatcccg gccagcaacg gacacgaggt ggccagacaa gcacaaacct
301ctcaggagcc ctaccacgac aaggccagag aacaccccga tgacggaaag catccagatg
361gaggcctcta caacaaggga ccctcctact cgagttattc cgggtacata atgatgccaa
421atatgaataa cgacccatac atgtcaaatg gatctctttc tccacccatc ccgagaacat
481caaataaagt gcccgtggtg cagccatccc atgcggtcca tcctctcacc cccctcatca
541cttacagtga cgagcacttt tctccaggat cacacccgtc acacatccca tcagatgtca
601actccaaaca aggcatgtcc agacatcctc cagctcctga tatccctact ttttatccct
661tgtctccggg tggtgttgga cagatcaccc cacctcttgg ctggcaaggt cagcctgtat
721atcccatcac gggtggattc aggcaaccct acccatcctc actgtcagtc gacacttcca
781tgtccaggtt ttcccatcat atgattcccg gtcctcctgg tccccacaca actggcatcc
841ctcatccagc tattgtaaca cctcaggtca aacaggaaca tccccacact gacagtgacc
901taatgcacgt gaagcctcag catgaacaga gaaaggagca ggagccaaaa agacctcaca
961ttaagaagcc tctgaatgct tttatgttat acatgaaaga aatgagagcg aatgtcgttg
1021ctgagtgtac tctaaaagaa agtgcagcta tcaaccagat tcttggcaga aggtggcatg
1081ccctctcccg tgaagagcag gctaaatatt atgaattagc acggaaagaa agacagctac
1141atatgcagct ttatccaggc tggtctgcaa gagacaatta tggtaagaaa aagaagagga
1201agagagagaa actacaggaa tctgcatcag gtacaggtcc aagaatgaca gctgcctaca
1261tctgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1321tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
1381tctggatta

Download FASTA (ORF) (Full)