Construct: ORF ccsbBroad304_03336

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014894.1_s304c1, BRDN0000409241
Derived from:
ccsbBroadEn_03336
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM49B (51571)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03336
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51571 FAM49B family with sequence simila... NM_001256763.2 100% 100%
2 human 51571 FAM49B family with sequence simila... NM_001353242.2 100% 100%
3 human 51571 FAM49B family with sequence simila... NM_001353243.2 100% 100%
4 human 51571 FAM49B family with sequence simila... NM_001353244.2 100% 100%
5 human 51571 FAM49B family with sequence simila... NM_001353245.1 100% 100%
6 human 51571 FAM49B family with sequence simila... NM_001353246.1 100% 100%
7 human 51571 FAM49B family with sequence simila... NM_001353247.1 100% 100%
8 human 51571 FAM49B family with sequence simila... NM_001353248.2 100% 100%
9 human 51571 FAM49B family with sequence simila... NM_001353249.1 100% 100%
10 human 51571 FAM49B family with sequence simila... NM_001353250.1 100% 100%
11 human 51571 FAM49B family with sequence simila... NM_001353251.1 100% 100%
12 human 51571 FAM49B family with sequence simila... NM_001353252.1 100% 100%
13 human 51571 FAM49B family with sequence simila... NM_001353253.1 100% 100%
14 human 51571 FAM49B family with sequence simila... NM_001353254.2 100% 100%
15 human 51571 FAM49B family with sequence simila... NM_001353255.1 100% 100%
16 human 51571 FAM49B family with sequence simila... NM_001353256.2 100% 100%
17 human 51571 FAM49B family with sequence simila... NM_001353257.2 100% 100%
18 human 51571 FAM49B family with sequence simila... NM_001353258.2 100% 100%
19 human 51571 FAM49B family with sequence simila... NM_001353259.2 100% 100%
20 human 51571 FAM49B family with sequence simila... NM_001353260.2 100% 100%
21 human 51571 FAM49B family with sequence simila... NM_001353261.2 100% 100%
22 human 51571 FAM49B family with sequence simila... NM_001353262.2 100% 100%
23 human 51571 FAM49B family with sequence simila... NM_001353263.2 100% 100%
24 human 51571 FAM49B family with sequence simila... NM_001353264.2 100% 100%
25 human 51571 FAM49B family with sequence simila... NM_001353265.2 100% 100%
26 human 51571 FAM49B family with sequence simila... NM_001353266.2 100% 100%
27 human 51571 FAM49B family with sequence simila... NM_001353267.2 100% 100%
28 human 51571 FAM49B family with sequence simila... NM_001353268.2 100% 100%
29 human 51571 FAM49B family with sequence simila... NM_016623.5 100% 100%
30 human 51571 FAM49B family with sequence simila... XM_011517112.3 100% 100%
31 human 51571 FAM49B family with sequence simila... XM_011517121.3 100% 100%
32 human 51571 FAM49B family with sequence simila... XM_017013545.2 100% 100%
33 human 51571 FAM49B family with sequence simila... XM_017013548.1 100% 100%
34 human 51571 FAM49B family with sequence simila... XM_017013551.2 100% 100%
35 human 51571 FAM49B family with sequence simila... XM_024447180.1 100% 100%
36 human 51571 FAM49B family with sequence simila... NM_001353302.1 97% 96.9% (many diffs)
37 human 51571 FAM49B family with sequence simila... NM_001353303.1 97% 96.9% (many diffs)
38 human 51571 FAM49B family with sequence simila... NM_001353304.1 97% 96.9% (many diffs)
39 human 51571 FAM49B family with sequence simila... NM_001353305.1 97% 96.9% (many diffs)
40 human 51571 FAM49B family with sequence simila... NM_001353306.2 97% 96.9% (many diffs)
41 human 51571 FAM49B family with sequence simila... NM_001353307.2 97% 96.9% (many diffs)
42 human 51571 FAM49B family with sequence simila... NM_001353308.1 97% 96.9% (many diffs)
43 human 51571 FAM49B family with sequence simila... NM_001353309.1 97% 96.9% (many diffs)
44 human 51571 FAM49B family with sequence simila... NM_001353310.2 97% 96.9% (many diffs)
45 human 51571 FAM49B family with sequence simila... NM_001353311.2 97% 96.9% (many diffs)
46 human 51571 FAM49B family with sequence simila... NM_001353312.2 97% 96.9% (many diffs)
47 human 51571 FAM49B family with sequence simila... NM_001353313.2 97% 96.9% (many diffs)
48 human 51571 FAM49B family with sequence simila... NM_001353314.2 97% 96.9% (many diffs)
49 human 51571 FAM49B family with sequence simila... NM_001353315.2 97% 96.9% (many diffs)
50 human 51571 FAM49B family with sequence simila... XM_017013554.2 97% 96.9% (many diffs)
51 human 51571 FAM49B family with sequence simila... XM_017013557.2 97% 96.9% (many diffs)
52 human 51571 FAM49B family with sequence simila... NM_001353316.2 94.8% 89.8% (many diffs)
53 human 51571 FAM49B family with sequence simila... NM_001330612.2 54.9% 54.9% 0_1ins438
54 human 51571 FAM49B family with sequence simila... NM_001353269.1 54.9% 54.9% 0_1ins438
55 human 51571 FAM49B family with sequence simila... NM_001353270.1 54.9% 54.9% 0_1ins438
56 human 51571 FAM49B family with sequence simila... NM_001353271.1 54.9% 54.9% 0_1ins438
57 human 51571 FAM49B family with sequence simila... NM_001353272.1 54.9% 54.9% 0_1ins438
58 human 51571 FAM49B family with sequence simila... NM_001353273.1 54.9% 54.9% 0_1ins438
59 human 51571 FAM49B family with sequence simila... NM_001353274.1 54.9% 54.9% 0_1ins438
60 human 51571 FAM49B family with sequence simila... NM_001353275.1 54.9% 54.9% 0_1ins438
61 human 51571 FAM49B family with sequence simila... NM_001353276.2 54.9% 54.9% 0_1ins438
62 human 51571 FAM49B family with sequence simila... NM_001353277.1 54.9% 54.9% 0_1ins438
63 human 51571 FAM49B family with sequence simila... NM_001353278.1 54.9% 54.9% 0_1ins438
64 human 51571 FAM49B family with sequence simila... NM_001353279.1 54.9% 54.9% 0_1ins438
65 human 51571 FAM49B family with sequence simila... NM_001353280.1 54.9% 54.9% 0_1ins438
66 human 51571 FAM49B family with sequence simila... NM_001353281.1 54.9% 54.9% 0_1ins438
67 human 51571 FAM49B family with sequence simila... NM_001353282.2 54.9% 54.9% 0_1ins438
68 human 51571 FAM49B family with sequence simila... NM_001353283.2 54.9% 54.9% 0_1ins438
69 human 51571 FAM49B family with sequence simila... NM_001353284.2 54.9% 54.9% 0_1ins438
70 human 51571 FAM49B family with sequence simila... NM_001353285.2 54.9% 54.9% 0_1ins438
71 human 51571 FAM49B family with sequence simila... NM_001353286.2 54.9% 54.9% 0_1ins438
72 human 51571 FAM49B family with sequence simila... NM_001353287.2 54.9% 54.9% 0_1ins438
73 human 51571 FAM49B family with sequence simila... NM_001353288.2 54.9% 54.9% 0_1ins438
74 human 51571 FAM49B family with sequence simila... NM_001353289.2 54.9% 54.9% 0_1ins438
75 human 51571 FAM49B family with sequence simila... NM_001353290.2 54.9% 54.9% 0_1ins438
76 human 51571 FAM49B family with sequence simila... NM_001353291.2 54.9% 54.9% 0_1ins438
77 human 51571 FAM49B family with sequence simila... NM_001353292.2 54.9% 54.9% 0_1ins438
78 human 51571 FAM49B family with sequence simila... NM_001353293.2 54.9% 54.9% 0_1ins438
79 human 51571 FAM49B family with sequence simila... NM_001353294.2 54.9% 54.9% 0_1ins438
80 human 51571 FAM49B family with sequence simila... NM_001353295.2 54.9% 54.9% 0_1ins438
81 human 51571 FAM49B family with sequence simila... NM_001353296.2 54.9% 54.9% 0_1ins438
82 human 51571 FAM49B family with sequence simila... NM_001353297.2 54.9% 54.9% 0_1ins438
83 human 51571 FAM49B family with sequence simila... NM_001353298.2 54.9% 54.9% 0_1ins438
84 human 51571 FAM49B family with sequence simila... NM_001353299.2 54.9% 54.9% 0_1ins438
85 human 51571 FAM49B family with sequence simila... NM_001353300.2 54.9% 54.9% 0_1ins438
86 human 51571 FAM49B family with sequence simila... NM_001353301.2 54.9% 54.9% 0_1ins438
87 mouse 223601 Fam49b family with sequence simila... NM_144846.5 94.7% 99.6% (many diffs)
88 mouse 223601 Fam49b family with sequence simila... XM_006520761.2 94.7% 99.6% (many diffs)
89 mouse 223601 Fam49b family with sequence simila... XM_006520763.2 94.7% 99.6% (many diffs)
90 mouse 223601 Fam49b family with sequence simila... XM_006520764.3 94.7% 99.6% (many diffs)
91 mouse 223601 Fam49b family with sequence simila... XM_011245563.1 94.7% 99.6% (many diffs)
92 mouse 223601 Fam49b family with sequence simila... XM_011245565.2 94.7% 99.6% (many diffs)
93 mouse 223601 Fam49b family with sequence simila... XM_006520762.3 91.8% 96.6% (many diffs)
94 mouse 223601 Fam49b family with sequence simila... XM_006520765.2 91.8% 96.6% (many diffs)
95 mouse 223601 Fam49b family with sequence simila... XM_011245564.1 91.8% 96.6% (many diffs)
96 mouse 223601 Fam49b family with sequence simila... XM_017316550.1 91.8% 96.6% (many diffs)
97 mouse 223601 Fam49b family with sequence simila... XM_006520766.2 51.9% 54.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1038
ORF length:
972
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gaatcttctt aaagttttga catgcacaga ccttgagcag gggccaaatt
121ttttccttga ttttgaaaat gcccagccta cagagtctga gaaggaaatt tataatcagg
181tgaatgtagt attaaaagat gcagaaggca tcttggagga cttgcagtca tacagaggag
241ctggccacga aatacgagag gcaatccagc atccagcaga tgagaagttg caagagaagg
301catggggtgc agttgttcca ctagtaggca aattaaagaa attttacgaa ttttctcaga
361ggttagaagc agcattaaga ggtcttctgg gagccttaac aagtacccca tattctccca
421cccagcatct agagcgagag caggctcttg ctaaacagtt tgcagaaatt cttcatttca
481cactccggtt tgatgaactc aagatgacaa atcctgccat acagaatgat ttcagctatt
541atagaagaac attgagtcgt atgaggatta acaatgtacc ggcagaagga gaaaatgaag
601taaataatga attggcaaat cgaatgtctt tgttttatgc tgaggcaact ccaatgctga
661aaaccttgag tgatgccaca acaaaatttg tatcagagaa taaaaattta ccaatagaaa
721ataccacaga ttgtttaagc acaatggcta gtgtatgcag agtcatgctg gaaacaccgg
781aatacagaag cagatttaca aatgaagaga cagtgtcatt ctgcttgagg gtaatggtgg
841gtgtcataat actctatgac cacgtacatc cagtgggagc atttgctaaa acttccaaaa
901ttgatatgaa aggttgtatc aaagttctta aggaccaacc tcctaatagt gtggaaggtc
961ttctaaatgc tctcaggtac acaacaaaac atttgaatga tgagactacc tccaagcaaa
1021ttaaatccat gctgcaatac ccaactttct tgtacaaagt ggttggtaag cctatcccta
1081accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1141agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)