Construct: ORF ccsbBroad304_03622
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005465.1_s304c1, BRDN0000410860
- Derived from:
- ccsbBroadEn_03622
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC48A1 (55652)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_03622
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55652 | SLC48A1 | solute carrier family 48 me... | NM_017842.3 | 100% | 100% | |
| 2 | human | 55652 | SLC48A1 | solute carrier family 48 me... | XM_017019617.2 | 100% | 100% | |
| 3 | human | 55652 | SLC48A1 | solute carrier family 48 me... | XM_005269016.4 | 70% | 57.5% | (many diffs) |
| 4 | human | 55652 | SLC48A1 | solute carrier family 48 me... | XM_024449045.1 | 67.9% | 54.3% | (many diffs) |
| 5 | human | 55652 | SLC48A1 | solute carrier family 48 me... | XM_024449046.1 | 67.9% | 54.3% | (many diffs) |
| 6 | mouse | 67739 | Slc48a1 | solute carrier family 48 (h... | NM_026353.4 | 90.1% | 92.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 504
- ORF length:
- 438
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc cccgtccagg ctgcagctcg gcctccgcgc cgcctactcc ggcatcagct 121 ccgtggccgg cttctccatc ttcctcgtct ggacggtggt ctaccgacag ccggggaccg 181 cggccatggg agggctcgca ggggtgctgg cactgtgggt cctggtgacg cacgtgatgt 241 acatgcaaga ttattggagg acctggctca aggggctgcg cggcttcttc ttcgtgggcg 301 tcctcttctc ggccgtctcc atcgctgcct tctgcacctt cctcgtgctg gccatcaccc 361 ggcatcagag cctcacagac cccaccagct actacctctc cagcgtctgg agcttcattt 421 ccttcaagtg ggccttcctg ctcagcctct atgcccaccg ctaccgggct gactttgctg 481 acatcagcat cctcagcgat ttctgcccaa ctttcttgta caaagtggtt ggtaagccta 541 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 601 gcgttaagtc gacaatcaac ctctggatta