Construct: ORF ccsbBroad304_03629
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014263.1_s304c1, BRDN0000404673
- Derived from:
- ccsbBroadEn_03629
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KANSL3 (55683)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_03629
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NM_001115016.3 | 100% | 100% | |
| 2 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_005263987.1 | 99.7% | 99.7% | 1931_1932insAGCTGC |
| 3 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511460.3 | 98.2% | 98% | (many diffs) |
| 4 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511461.3 | 97.9% | 97.8% | (many diffs) |
| 5 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NM_001349257.2 | 97.1% | 97.1% | 1741_1818del |
| 6 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NM_001349258.2 | 96.9% | 96.9% | 1741_1818del;2009_2010insAGCTGC |
| 7 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NM_001349256.2 | 96.4% | 96.1% | (many diffs) |
| 8 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511454.3 | 95.4% | 95.3% | (many diffs) |
| 9 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511455.3 | 95.4% | 95.3% | (many diffs) |
| 10 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511456.3 | 95.4% | 95.3% | (many diffs) |
| 11 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511457.3 | 95.4% | 95.3% | (many diffs) |
| 12 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511458.3 | 95.2% | 95% | (many diffs) |
| 13 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511459.3 | 92.6% | 92.5% | (many diffs) |
| 14 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511462.3 | 89.2% | 88.9% | (many diffs) |
| 15 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511466.3 | 88.4% | 88.3% | (many diffs) |
| 16 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NM_001349259.2 | 87.5% | 87.5% | 0_1ins261;1480_1557del |
| 17 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511463.3 | 85.9% | 85.8% | (many diffs) |
| 18 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511464.3 | 85.9% | 85.8% | (many diffs) |
| 19 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_017004472.2 | 85.7% | 85.6% | (many diffs) |
| 20 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XR_002959316.1 | 84.6% | (many diffs) | |
| 21 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XR_002959317.1 | 81.9% | (many diffs) | |
| 22 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XR_922962.1 | 78.7% | (many diffs) | |
| 23 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NM_001349260.2 | 74.6% | 74.1% | (many diffs) |
| 24 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XM_011511467.3 | 72.9% | 72.8% | (many diffs) |
| 25 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NM_001349261.2 | 71.9% | 71.9% | 0_1ins684;1057_1134del |
| 26 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NM_001349262.2 | 71.9% | 71.9% | 0_1ins684;1057_1134del |
| 27 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XR_001738835.1 | 65.1% | (many diffs) | |
| 28 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XR_001738841.2 | 56.5% | (many diffs) | |
| 29 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XR_001738840.2 | 54.5% | (many diffs) | |
| 30 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_047653.2 | 50.4% | 1_80del;296_356del;2776_5217del | |
| 31 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_047654.2 | 50.3% | (many diffs) | |
| 32 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_047656.2 | 49.3% | 1_80del;465_466ins91;2624_5065del | |
| 33 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XR_244892.1 | 48.9% | (many diffs) | |
| 34 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_047655.2 | 48.5% | (many diffs) | |
| 35 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XR_427101.1 | 47.6% | (many diffs) | |
| 36 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_146098.2 | 46.7% | 1_80del;2336_2337ins223;2492_4933del | |
| 37 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_047657.2 | 46% | (many diffs) | |
| 38 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_146099.2 | 45.5% | (many diffs) | |
| 39 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | XR_922963.2 | 45.2% | (many diffs) | |
| 40 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_047658.2 | 44.4% | (many diffs) | |
| 41 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_146100.2 | 44.3% | (many diffs) | |
| 42 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_146102.2 | 43.6% | (many diffs) | |
| 43 | human | 55683 | KANSL3 | KAT8 regulatory NSL complex... | NR_146101.2 | 43.6% | (many diffs) | |
| 44 | mouse | 226976 | Kansl3 | KAT8 regulatory NSL complex... | NM_172652.3 | 89.2% | 94.4% | (many diffs) |
| 45 | mouse | 226976 | Kansl3 | KAT8 regulatory NSL complex... | NM_001310513.1 | 86.6% | 91.7% | (many diffs) |
| 46 | mouse | 226976 | Kansl3 | KAT8 regulatory NSL complex... | XM_006495902.3 | 86.2% | 91.2% | (many diffs) |
| 47 | mouse | 226976 | Kansl3 | KAT8 regulatory NSL complex... | XM_011238482.2 | 76.8% | 81.1% | (many diffs) |
| 48 | mouse | 226976 | Kansl3 | KAT8 regulatory NSL complex... | XM_017320235.1 | 76.8% | 81.1% | (many diffs) |
| 49 | mouse | 226976 | Kansl3 | KAT8 regulatory NSL complex... | XM_017320236.1 | 76.8% | 81.1% | (many diffs) |
| 50 | mouse | 226976 | Kansl3 | KAT8 regulatory NSL complex... | XM_017320240.1 | 76.8% | 81.1% | (many diffs) |
| 51 | mouse | 226976 | Kansl3 | KAT8 regulatory NSL complex... | XM_017320242.1 | 54.1% | 56.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2700
- ORF length:
- 2634
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc ccaccggggt ggggagaggg acttccagac ttcagctcga cgcatgggca 121 cctcgctgct cttccagctt tcagtgcatg aacgggagct ggacctggtt tttctggatc 181 atagctatgc caagccttgg agtgcccacc cagatgccag tagtgcccgc cccacccgca 241 tgctctttgt cactccccgg cggcagcacg aaagtaccat tgaatcagac gtcccaatag 301 atgtggagac ggtcacatca acgcctatgc cactctatga caatcagaag gcacgcagcg 361 tgatgaatga gtgtgaacgg catgtcatct ttgccaggac tgatgcagat gcccctcctc 421 caccagagga ctgggaggag catgtcaaca ggactggctg gacaatggcc cagaacaagc 481 tattcaacaa gatcctcaaa gccctgcagt ctgaccggct tgcccgcttg gccaacgaag 541 gggcttgtaa tgagccagtg ctgcgccgtg ttgctgtgga caagtgtgca aggagagtgc 601 ggcaggctct ggcaagtgtg agctgggata ccaagctgat ccagtggctg cacaccaccc 661 ttgtggagac cttgagtctg cccatgctgg cagcctacct ggatgctttg cagacgctga 721 aggggaagat cccaaccttg attgaccgga tgcttgtgtc atccaacaca aagactgggg 781 ctgcaggagc tgaggccttg tctctcctac tgaagaggcc ctgggaccct gctgtgggtg 841 tgctttctca taacaaacca agcaaactcc ctggctctcc gctgattctc atcgcctcct 901 ctggtccctc cagctctgtg tttcccactt cacgccgcca ccgcttctgg caatctcagc 961 tgtcctgctt gggcaaggtc atccctgtag ccacccatct gctgaacaat ggcagtgggg 1021 taggagttct acagtgtctc gagcatatga ttggggcagt gagaagcaaa gtgctggaga 1081 ttcacagcca tttcccacac aaacccatta tcttgattgg ctggaacaca ggagctttgg 1141 tggcctgtca tgtgtcagta atggagtatg tcactgcagt tgtctgcctt gggtttcctc 1201 tgcttactgt ggatggcccc agaggggatg tagatgatcc cctcttggat atgaagactc 1261 cagtcctctt tgtcattggt cagaattccc ttcaatgtca ccctgaagcc atggaggact 1321 tccgggagaa gattcgagct gagaacagct tggtggtggt tgggggagct gatgacaatc 1381 tcagaataag caaagcaaag aagaaatcag aagggttgac tcagagcatg gtggacagat 1441 gtattcagga tgagattgtg gactttctga ctggagtgct cactcgtgct gagggtcaca 1501 tgggctctga acctcgggat caggatgctg agaagaagaa gaagccccgc gatgtggccc 1561 gcagagactt ggcctttgaa gtccctgagc ggggcagtcg acctgcctcc ccagctgcca 1621 agctgcccgc ctcaccctca ggctcagagg atctctccag tgtgtccagc agccccacct 1681 ccagtcccaa gaccaaagtg accacagtga cctctgccca gaagtccagt cagattggaa 1741 gttctcagct gctgaagaga catgtgcagc ggacagaagc tgtgctgacc cacaaacaag 1801 ctcaagttcc catttcatca gaaccaccag aggaaggaga gaaagaggat cttagggttc 1861 agctgaagcg acaccatccc tcgagtcccc ttcctggcag taagacctcc aaacgaccga 1921 agatcaaggt gtcccttatc tcccaagggg acacagctgg agggccttgt gctccttccc 1981 aaggaagtgc tccagaagct gcaggtggga agcccatcac catgacactg gggcaggctt 2041 cagcaggggc caaggagctc acaggacttc tcaccacagc caagtccagt tcttctgaag 2101 gtggagtctc agccagccca gtcccttcag tggtctccag cagcactgca cccagtgcct 2161 tgcacacact gcagagccgc ctggtggcca catctcctgg cagctccctc ccaggggcca 2221 catcagccag cagcctcctc caaggcctca gcttcagctt gcaggatatc agcagcaaga 2281 cctctggcct tccagcaaat ccctccccag gaccagcccc acaggccacc agtgtgaagt 2341 tgcccacccc catgcagagc ctgggtgcca tcaccacggg caccagcacc attgtccgta 2401 ccattcctgt ggccaccact ctctcctcct tgggtgccac tcctggtggg aagcccacag 2461 ccatccacca gctgctgacc aatgggggcc tcgctaagtt ggcaagcagc ctccctggcc 2521 tggctcagat ctctaaccaa gcatcaggct tgaaggtccc caccaccatt actctgacac 2581 ttcgtggcca gccgagcagg atcactacac tgagccctat gggctcagga gcagccccat 2641 ccgaggagtc ctcttcccag gtgctgccct ccagctcaca gcgcctgcct ccagcaccct 2701 gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg 2761 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct 2821 ggatta