Construct: ORF ccsbBroad304_03687

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015101.1_s304c1, BRDN0000403418
Derived from:
ccsbBroadEn_03687
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NSFL1C (55968)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03687
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55968 NSFL1C NSFL1 cofactor NM_016143.4 100% 100%
2 human 55968 NSFL1C NSFL1 cofactor NM_001206736.1 99.4% 99.4% 277_282delAGGAGC
3 human 55968 NSFL1C NSFL1 cofactor XM_011529301.2 99.1% 99.1% 202_210delAGAGAAAAG
4 human 55968 NSFL1C NSFL1 cofactor XM_011529300.2 98.6% 98.6% 202_210delAGAGAAAAG;286_291delAGGAGC
5 human 55968 NSFL1C NSFL1 cofactor NM_018839.4 91.6% 91.6% 444_445ins93
6 human 55968 NSFL1C NSFL1 cofactor XM_011529304.1 84.9% 81.8% (many diffs)
7 human 55968 NSFL1C NSFL1 cofactor XM_017027957.2 84.5% 81.4% (many diffs)
8 human 55968 NSFL1C NSFL1 cofactor XM_017027956.1 84.4% 82.7% (many diffs)
9 human 55968 NSFL1C NSFL1 cofactor XM_011529302.2 84% 82.2% (many diffs)
10 human 55968 NSFL1C NSFL1 cofactor XM_006723592.3 70.5% 64.6% 0_1ins238;41_42ins31;44_45ins58
11 human 55968 NSFL1C NSFL1 cofactor XM_006723593.3 70.5% 64.6% 0_1ins238;41_42ins31;44_45ins58
12 human 55968 NSFL1C NSFL1 cofactor XM_006723594.3 70% 67% 0_1ins238;38_39ins95
13 human 55968 NSFL1C NSFL1 cofactor XM_017027958.2 69.9% 67% (many diffs)
14 human 55968 NSFL1C NSFL1 cofactor XR_001754341.2 36.4% (many diffs)
15 human 55968 NSFL1C NSFL1 cofactor XR_002958493.1 27.7% (many diffs)
16 human 55968 NSFL1C NSFL1 cofactor NR_038164.1 25.7% (many diffs)
17 mouse 386649 Nsfl1c NSFL1 (p97) cofactor (p47) NM_001291074.1 91.8% 96.2% (many diffs)
18 mouse 386649 Nsfl1c NSFL1 (p97) cofactor (p47) NM_198326.3 91.3% 95.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1176
ORF length:
1110
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggcggagcga caggaggcgc tgagggagtt cgtggcggtg acgggcgccg
121aggaggaccg ggcccgcttc tttctcgagt cggccggctg ggacttgcag atcgcgctag
181cgagctttta tgaggacgga ggggatgaag acattgtgac catttcgcag gcaaccccca
241gttcagtgtc cagaggcaca gcccccagtg ataatagagt gacatccttc agagacctca
301ttcatgacca agatgaagat gaggaggaag aggaaggcca gaggttttat gctgggggct
361cagagagaag tggacagcag attgttggcc ctcccaggaa gaaaagtccc aacgagctgg
421tggatgatct ctttaaaggt gccaaagagc atggagctgt agctgtggag cgagtgacca
481agagccctgg agagaccagt aaaccgagac catttgcagg aggtggctac cgccttgggg
541cagcaccaga ggaagagtct gcctatgtgg caggagaaaa gaggcagcat tccagccaag
601atgttcatgt agtattgaaa ctctggaaga gtggattcag cctggataat ggagaactca
661gaagctacca agacccatcc aatgcccagt ttctggagtc tatccgcaga ggggaggtgc
721cagcagagct tcggaggcta gctcacggtg gacaggtgaa cttggatatg gaggaccatc
781gggacgagga ctttgtgaag cccaaaggag ccttcaaagc cttcactggc gagggtcaga
841aactgggcag cactgccccc caggtgttga gtaccagctc tccagcccaa caggcagaaa
901atgaagccaa agccagctct tccatcttaa tcgacgaatc agagcctacc acaaacatcc
961aaattcggct tgcagacggc gggaggctgg tgcagaaatt taaccacagc cacaggatca
1021gcgacatccg actcttcatc gtggatgccc ggccagccat ggctgccacc agctttatcc
1081tcatgactac tttcccgaac aaagagctgg ctgatgagag ccagaccctg aaggaagcca
1141acctgctcaa tgctgtcatc gtgcagcggt taacatatcc aactttcttg tacaaagtgg
1201ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1261ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)