Construct: ORF ccsbBroad304_03948

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005472.1_s304c1, BRDN0000400845
Derived from:
ccsbBroadEn_03948
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MTMR14 (64419)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03948
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64419 MTMR14 myotubularin related protei... NM_001077526.3 100% 100%
2 human 64419 MTMR14 myotubularin related protei... XM_017007038.2 95.8% 95.8% 819_820ins75
3 human 64419 MTMR14 myotubularin related protei... NM_001077525.3 92% 92% 1614_1769del
4 human 64419 MTMR14 myotubularin related protei... XM_017007036.1 91.5% 89.2% (many diffs)
5 human 64419 MTMR14 myotubularin related protei... NM_022485.5 89.9% 89.9% 1432_1433ins180
6 human 64419 MTMR14 myotubularin related protei... XM_005265400.2 88.1% 88.1% 819_820ins75;1539_1694del
7 human 64419 MTMR14 myotubularin related protei... XM_017007037.1 87.5% 85.2% (many diffs)
8 human 64419 MTMR14 myotubularin related protei... XM_017007042.2 85.7% 85.7% 819_820ins75;1357_1358ins180
9 human 64419 MTMR14 myotubularin related protei... XM_017007034.1 84.5% 82.4% (many diffs)
10 human 64419 MTMR14 myotubularin related protei... XM_017007043.1 84.2% 82.7% 0_1ins133;26_27ins149
11 human 64419 MTMR14 myotubularin related protei... XM_017007039.1 82% 79.6% (many diffs)
12 human 64419 MTMR14 myotubularin related protei... XM_017007035.1 80.8% 78.7% (many diffs)
13 human 64419 MTMR14 myotubularin related protei... XM_024453709.1 79.7% 79.7% 0_1ins363
14 human 64419 MTMR14 myotubularin related protei... XM_017007040.1 78% 75.7% (many diffs)
15 human 64419 MTMR14 myotubularin related protei... XM_011534012.1 77.5% 76.1% 0_1ins133;26_27ins149;1332_1487del
16 human 64419 MTMR14 myotubularin related protei... XM_017007041.1 73.6% 72.3% (many diffs)
17 human 64419 MTMR14 myotubularin related protei... XM_011534013.1 73.3% 73.3% 0_1ins363;1251_1406del
18 human 64419 MTMR14 myotubularin related protei... XR_245152.2 72.5% (many diffs)
19 human 64419 MTMR14 myotubularin related protei... XR_001740233.2 69.3% (many diffs)
20 human 64419 MTMR14 myotubularin related protei... XR_001740231.1 66.6% (many diffs)
21 human 64419 MTMR14 myotubularin related protei... XM_017007045.2 64.2% 64.2% 0_1ins642
22 human 64419 MTMR14 myotubularin related protei... XR_001740232.1 63.6% (many diffs)
23 human 64419 MTMR14 myotubularin related protei... XM_024453710.1 59% 59% 0_1ins642;972_1127del
24 human 64419 MTMR14 myotubularin related protei... XM_017007044.2 55.2% 55.2% 0_1ins642;177_178ins75;897_1052del
25 mouse 97287 Mtmr14 myotubularin related protei... XM_006506823.3 89.2% 90.4% (many diffs)
26 mouse 97287 Mtmr14 myotubularin related protei... NM_026849.2 82.1% 83.2% (many diffs)
27 mouse 97287 Mtmr14 myotubularin related protei... XM_006506824.3 77.4% 70.2% (many diffs)
28 mouse 97287 Mtmr14 myotubularin related protei... XM_006506826.3 74.7% 67.9% (many diffs)
29 mouse 97287 Mtmr14 myotubularin related protei... XR_377503.3 66.1% (many diffs)
30 mouse 97287 Mtmr14 myotubularin related protei... XM_006506825.1 65.6% 66.6% (many diffs)
31 mouse 97287 Mtmr14 myotubularin related protei... XR_001785185.1 62% (many diffs)
32 mouse 97287 Mtmr14 myotubularin related protei... XM_006506827.3 52.8% 53.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1860
ORF length:
1794
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc cggcgctcgg gccgccgccg ccgctgcctc ggcggggtcc tcggcctctt
121caggcaacca gccgcctcag gagctggggc ttggggagct gctggaggag ttctcccgga
181ctcagtaccg ggccaaggat ggcagcggga ccggcggctc taaggttgag cgcattgaga
241agagatgtct ggagctgttt ggccgagact actgtttcag cgtgattcca aacacgaatg
301gggatatctg tggccactat ccccggcaca tcgtgttcct ggagtatgag agttctgaga
361aggagaaaga cacgtttgag agtaccgtac aggtgagcaa gttgcaagac ctcatccacc
421gcagcaagat ggcccggtgc agaggacggt ttgtctgccc agtaatcctg ttcaagggca
481agcacatttg caggtcggcc acactggctg gatggggaga gctgtatgga cgctcaggct
541acaactattt tttctcaggg ggtgcagatg atgcctgggc agatgtggag gacgtcacgg
601aggaggactg tgctcttcga agtggtgaca cgcatctttt tgataaggtc agaggctatg
661acatcaagct gcttcgatac ctgtcagtca aatacatctg tgacctgatg gtggagaaca
721agaaggtgaa gtttggcatg aatgtaacct cctctgagaa ggtggacaaa gcccagcgct
781atgccgactt cactctcctc tccatcccgt atccaggctg tgaatttttc aaggaatata
841aagatcggga ttacatggca gaagggctca tatttaactg gaagcaggac tacgttgatg
901ccccattgag catccccgac ttcctgactc actctctgaa cattgactgg agccagtatc
961agtgttggga tctggtgcaa caaacacaaa actacctgaa gctgctgctt tccttagtta
1021acagtgatga tgacagcggg ctgctggtac actgtatctc aggctgggat cggacccccc
1081tcttcatctc cctcctgcgc ctttccttgt gggctgatgg gctcatccac acgtccctga
1141agcccactga gatcctctac ctcactgtgg cctatgactg gttcctcttc gggcacatgt
1201tggtagatcg gctcagcaaa ggggaggaga ttttcttctt ctgcttcaat tttttgaagc
1261atattacctc cgaggagttc tctgctctga agacccagag gaggaagagt ttgccagccc
1321gggatggagg cttcaccctg gaagacatct gcatgctgag acgaaaggac cgtggcagca
1381ccaccagcct tggcagcgac ttctccctgg tcatggagag ttccccagga gccactggga
1441gcttcaccta tgaggccgtg gagctggtcc cagcaggagc gccaactcag gcagcttgga
1501ggaagagcca ctcatcctct ccacagagtg tcctctggaa ccggccacaa ccctcagagg
1561accgcttgcc ttcccagcag gggctggcgg aagccaggtc ttccagctcc tcttcctcaa
1621accattctga taactttttc aggatgggta gcagtcccct ggaggtcccc aaacccaggc
1681ttgcagccct gagtgatcga gagactcggc tgcaggaggt gcgctcagcc ttcttggctg
1741cgtacagcag cacagtgggg cttcgggcag tagcccccag tccttccggt gccatcgggg
1801gcctgctgga gcaatttgcc cgtggtgttg gactccggag catcagcagc aatgccttgt
1861gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
1921attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
1981ggatta

Download FASTA (ORF) (Full)