Construct: ORF ccsbBroad304_04020

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013487.1_s304c1, BRDN0000409331
Derived from:
ccsbBroadEn_04020
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCNM1 (79005)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04020
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79005 SCNM1 sodium channel modifier 1 NM_024041.4 100% 100%
2 human 100534012 TNFAIP8L2-SCNM1 TNFAIP8L2-SCNM1 readthrough NM_001204848.2 84.7% 84.7% 0_1ins105
3 human 79005 SCNM1 sodium channel modifier 1 NM_001204856.2 84.7% 84.7% 0_1ins105
4 human 100534012 TNFAIP8L2-SCNM1 TNFAIP8L2-SCNM1 readthrough NR_144937.2 34.3% (many diffs)
5 human 79005 SCNM1 sodium channel modifier 1 NR_037937.2 33.4% 1_9delACAGTCGTG;404_405ins50;650_1863del
6 mouse 69269 Scnm1 sodium channel modifier 1 NM_001163573.1 62.9% 64.3% (many diffs)
7 mouse 69269 Scnm1 sodium channel modifier 1 XM_017319715.1 53.5% 52.1% (many diffs)
8 mouse 69269 Scnm1 sodium channel modifier 1 XM_017319716.1 44.6% 40.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
756
ORF length:
690
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc tttcaagagg gaaggagacg attggagtca actcaatgtg ctcaaaaaaa
121gaagagtcgg ggacctccta gccagttaca ttccagagga tgaggcgctg atgcttcggg
181atggacgctt tgcttgtgcc atctgccccc atcgaccggt actggacacc ctggccatgc
241tgactgccca ccgtgcaggc aagaaacatc tgtccagctt gcagcttttc tatggcaaga
301agcagccggg aaaggaaaga aagcagaatc caaaacatca gaatgaattg agaagggaag
361aaaccaaagc tgaggctcct ctgctaactc agacacgact tatcacccag agtgctctgc
421acagagctcc ccactataac agttgctgcc gccggaagta cagaccagaa gcccctggtc
481cctctgtctc cctttcccct atgccaccct cagaggtcaa actccaaagt gggaagatca
541gtagggaacc tgaacctgcg gctggcccac aggccgagga gtcagcaact gtctcagccc
601ctgcacccat gagccccaca agaagacgag ccctggacca ttatctcacc cttcgaagct
661ctggatggat cccagatgga cgaggtcgat gggtaaaaga tgaaaatgtt gagtttgact
721ctgatgagga ggaaccacct gatctcccct tggactgccc aactttcttg tacaaagtgg
781ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
841ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)

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