Construct: ORF ccsbBroad304_04914

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001790.1_s304c1, BRDN0000408966
Derived from:
ccsbBroadEn_04914
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RALYL (138046)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04914
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 138046 RALYL RALY RNA binding protein like NM_001100392.2 100% 100%
2 human 138046 RALYL RALY RNA binding protein like NM_001100393.2 100% 100%
3 human 138046 RALYL RALY RNA binding protein like NM_001354305.1 100% 100%
4 human 138046 RALYL RALY RNA binding protein like NM_001354306.1 100% 100%
5 human 138046 RALYL RALY RNA binding protein like NM_001354308.1 100% 100%
6 human 138046 RALYL RALY RNA binding protein like NM_001354316.1 100% 100%
7 human 138046 RALYL RALY RNA binding protein like NM_001354320.1 100% 100%
8 human 138046 RALYL RALY RNA binding protein like NM_001354325.1 100% 100%
9 human 138046 RALYL RALY RNA binding protein like NM_173848.7 100% 100%
10 human 138046 RALYL RALY RNA binding protein like NM_001354314.1 99.6% 99.6% 683_684insAGA
11 human 138046 RALYL RALY RNA binding protein like NM_001287243.2 96.2% 95.8% 331_332ins33
12 human 138046 RALYL RALY RNA binding protein like NM_001354307.1 96.2% 95.8% 331_332ins33
13 human 138046 RALYL RALY RNA binding protein like NM_001354309.1 96.2% 95.8% 331_332ins33
14 human 138046 RALYL RALY RNA binding protein like NM_001354312.1 96.2% 95.8% 331_332ins33
15 human 138046 RALYL RALY RNA binding protein like NM_001354315.1 96.2% 95.8% 331_332ins33
16 human 138046 RALYL RALY RNA binding protein like NM_001354317.1 96.2% 95.8% 331_332ins33
17 human 138046 RALYL RALY RNA binding protein like NM_001354318.1 96.2% 95.8% 331_332ins33
18 human 138046 RALYL RALY RNA binding protein like XM_017013068.1 96.2% 95.8% 331_332ins33
19 human 138046 RALYL RALY RNA binding protein like XM_017013071.1 96.2% 95.8% 331_332ins33
20 human 138046 RALYL RALY RNA binding protein like XM_024447065.1 96.2% 95.8% 331_332ins33
21 human 138046 RALYL RALY RNA binding protein like XM_024447066.1 96.2% 95.8% 331_332ins33
22 human 138046 RALYL RALY RNA binding protein like XM_024447067.1 96.2% 95.8% 331_332ins33
23 human 138046 RALYL RALY RNA binding protein like NM_001100391.2 95.7% 95.7% 1_39del
24 human 138046 RALYL RALY RNA binding protein like NM_001354321.1 92.1% 91.7% 1_39del;370_371ins33
25 human 138046 RALYL RALY RNA binding protein like NM_001354311.1 79.9% 78.6% (many diffs)
26 human 138046 RALYL RALY RNA binding protein like NM_001354313.1 79.9% 78.6% (many diffs)
27 human 138046 RALYL RALY RNA binding protein like NM_001354319.1 79.9% 78.6% (many diffs)
28 human 138046 RALYL RALY RNA binding protein like XM_011517462.3 77.4% 75.6% (many diffs)
29 human 138046 RALYL RALY RNA binding protein like XM_017013080.2 77.4% 75.6% (many diffs)
30 human 138046 RALYL RALY RNA binding protein like NM_001354323.1 76.5% 75.3% (many diffs)
31 human 138046 RALYL RALY RNA binding protein like XM_017013081.2 76.2% 74.5% (many diffs)
32 human 138046 RALYL RALY RNA binding protein like XM_017013082.1 76.2% 74.5% (many diffs)
33 human 138046 RALYL RALY RNA binding protein like XM_024447068.1 74.1% 72.3% (many diffs)
34 human 138046 RALYL RALY RNA binding protein like NM_001287244.1 73% 71.9% (many diffs)
35 human 138046 RALYL RALY RNA binding protein like NM_001354322.1 72.9% 71.3% (many diffs)
36 human 138046 RALYL RALY RNA binding protein like NM_001354310.1 69.7% 69.7% 0_1ins264
37 human 138046 RALYL RALY RNA binding protein like XM_017013084.2 69.3% 67.8% (many diffs)
38 human 138046 RALYL RALY RNA binding protein like XM_024447069.1 68.3% 67.3% (many diffs)
39 human 138046 RALYL RALY RNA binding protein like XM_024447070.1 65.9% 65.6% 0_1ins264;67_68ins33
40 mouse 76897 Ralyl RALY RNA binding protein-like NM_001163328.1 88% 94.8% (many diffs)
41 mouse 76897 Ralyl RALY RNA binding protein-like NM_178631.4 88% 94.8% (many diffs)
42 mouse 76897 Ralyl RALY RNA binding protein-like XM_011248150.2 88% 94.8% (many diffs)
43 mouse 76897 Ralyl RALY RNA binding protein-like XM_017319801.1 88% 94.8% (many diffs)
44 mouse 76897 Ralyl RALY RNA binding protein-like XM_006530100.1 84% 90.5% (many diffs)
45 mouse 76897 Ralyl RALY RNA binding protein-like XM_006530101.1 80.7% 86.6% (many diffs)
46 mouse 76897 Ralyl RALY RNA binding protein-like XM_017319802.1 70.9% 72.8% (many diffs)
47 mouse 76897 Ralyl RALY RNA binding protein-like XM_017319803.1 70.3% 76.4% (many diffs)
48 mouse 76897 Ralyl RALY RNA binding protein-like XM_006530102.1 67.8% 69.6% (many diffs)
49 mouse 76897 Ralyl RALY RNA binding protein-like XM_006530103.1 67.1% 72.9% (many diffs)
50 mouse 76897 Ralyl RALY RNA binding protein-like NM_001163329.1 66% 67.3% (many diffs)
51 mouse 76897 Ralyl RALY RNA binding protein-like NM_001163330.1 48.3% 48.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
939
ORF length:
873
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac tggcaaaaca cagaccagca acgtcaccaa taagaatgac cccaagtcca
121tcaactcccg tgttttcatc ggcaatctaa atacggcaat tgtcaagaaa gttgacattg
181aagccatttt ttcaaagtat ggaaaaatag ttggatgttc cgttcacaaa ggttatgcat
241ttgtacagta catgagtgag cgacatgcaa gagctgcagt ggctggagaa aatgccagag
301tcatcgccgg ccaaccactt gatatcaaca tggcaggaga gcccaaacca tacagaccaa
361aacctggaaa caagaggccc ctttctgcac tttacagact tgaatcaaag gaacctttcc
421tgtctgttgg cggttatgtc tttgactatg attactacag agatgatttc tacaatcggt
481tatttgatta ccacgggcgt gtgcctccac ctccccgtgc agtaattccg ctgaagcgtc
541ccagagtggc agtcacaacg actcgcaggg ggaaaggagt cttttccatg aaaggtggat
601cgagatctac tgccagtggg tcaacaggtt ctaaattgaa atcagatgag ttacagacca
661tcaagaaaga attaacccag atcaaaacta aaattgactc cttgctaggg cgcctggaga
721agattgagaa acagcagaag gcggaggcag aagctcagaa gaagcaattg gaagagagtc
781tagtgctgat ccaagaggaa tgtgtgtcag agattgcaga tcactctaca gaggagcctg
841ctgaaggagg gccagatgcc gatggagaag agatgacaga tgggatagag gaggacttcg
901atgaagatgg gggtcatgag ctgtttctac agataaagtg cccaactttc ttgtacaaag
961tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1021gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.