Construct: ORF ccsbBroad304_05010

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008521.1_s304c1, BRDN0000410765
Derived from:
ccsbBroadEn_05010
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT6 (148281)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05010
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 148281 SYT6 synaptotagmin 6 NM_001270805.1 100% 100%
2 human 148281 SYT6 synaptotagmin 6 NM_001366223.1 100% 100%
3 human 148281 SYT6 synaptotagmin 6 NM_205848.3 100% 100%
4 human 148281 SYT6 synaptotagmin 6 NM_001366226.1 95.4% 95% (many diffs)
5 human 148281 SYT6 synaptotagmin 6 XM_024453337.1 95.4% 95% (many diffs)
6 human 148281 SYT6 synaptotagmin 6 NM_001253772.2 83.3% 83.3% 1_255del
7 human 148281 SYT6 synaptotagmin 6 XM_024453336.1 82.1% 81.7% (many diffs)
8 human 148281 SYT6 synaptotagmin 6 NM_001366225.1 81.9% 81.9% 1_255del;1491_1492ins21
9 human 148281 SYT6 synaptotagmin 6 NM_001366224.1 80.1% 79.7% (many diffs)
10 human 148281 SYT6 synaptotagmin 6 XR_001736985.1 29.7% 1_166del;1442_4283del
11 human 148281 SYT6 synaptotagmin 6 XR_002959489.1 21.5% 1_1797del;3073_5914del
12 human 148281 SYT6 synaptotagmin 6 XR_946547.3 21.2% 1_1797del;3033_3034ins21;3052_5893del
13 mouse 54524 Syt6 synaptotagmin VI NM_001276677.1 90.2% 96.7% (many diffs)
14 mouse 54524 Syt6 synaptotagmin VI NM_001276679.1 90.2% 96.7% (many diffs)
15 mouse 54524 Syt6 synaptotagmin VI NM_001276681.1 90.2% 96.7% (many diffs)
16 mouse 54524 Syt6 synaptotagmin VI NM_001276676.1 86.4% 92.1% (many diffs)
17 mouse 54524 Syt6 synaptotagmin VI XM_006501706.2 86.4% 92.1% (many diffs)
18 mouse 54524 Syt6 synaptotagmin VI XM_006501707.2 86.4% 92.1% (many diffs)
19 mouse 54524 Syt6 synaptotagmin VI XM_006501708.2 86.4% 92.1% (many diffs)
20 mouse 54524 Syt6 synaptotagmin VI NM_018800.4 75.2% 80.6% (many diffs)
21 mouse 54524 Syt6 synaptotagmin VI XM_006501705.2 72.7% 76.2% (many diffs)
22 mouse 54524 Syt6 synaptotagmin VI XM_006501704.3 72.6% 77.3% (many diffs)
23 mouse 54524 Syt6 synaptotagmin VI NM_001276680.1 71.9% 71.4% (many diffs)
24 mouse 54524 Syt6 synaptotagmin VI XR_375547.3 26.4% (many diffs)
25 mouse 54524 Syt6 synaptotagmin VI XR_375545.2 25.9% (many diffs)
26 mouse 54524 Syt6 synaptotagmin VI XR_375546.3 25.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1341
ORF length:
1275
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc ctggaggaac aaggaggcct ccagtccctc ttctgctaat ccccccttgg
121aagccctcca gagccccagc ttcagaggca acatggcgga caagctgaag gaccccagca
181ccctgggctt cctggaggcg gccgtgaaga tcagccacac gtccccagat atcccagctg
241aggtgcagat gtcggtcaag gagcacatca tgcgtcacac ccggctgcag cggcaaacta
301cagagccagc gtcatccacc aggcacacgt ccttcaagcg ccacctgcca aggcagatgc
361atgtctccag tgtagactat ggcaatgagc ttccaccagc agcagagcag cccaccagca
421ttggccgcat caagcctgag ctctacaagc agaagtcggt ggatggggag gatgccaagt
481ctgaggccac caagagctgc gggaagatca acttcagcct acgctacgat tacgagaccg
541agaccctgat tgtgcgtatc ctgaaggctt ttgacctccc tgccaaggac ttttgtggaa
601gctctgaccc ttatgtcaag atctacctcc tgcctgaccg caaatgcaag ctgcagaccc
661gggtgcaccg caagaccctg aaccccacct ttgatgagaa cttccacttc cctgtgccct
721atgaggagct ggctgaccgc aagctgcatc tcagtgtctt cgactttgac cgcttctccc
781gccatgacat gattggcgag gtcatcctgg acaacctctt tgaggcctct gacctgtctc
841gggaaacctc catctggaag gatatccaat atgccacaag tgaaagcgtg gacttgggag
901agatcatgtt ctccctttgc tacctgccca ctgcaggcag gctcaccctc acagtgatta
961agtgtcggaa cctcaaggcg atggacatca caggctattc agatccctat gtgaaagtgt
1021ccttgctctg tgatgggcgg aggctgaaga agaagaaaac aaccataaag aaaaacactc
1081tcaatcctgt ctacaatgag gccatcatct ttgacattcc cccggaaaac atggatcaag
1141tcagcctgct catctcagtc atggactatg atcgagtggg ccacaatgag atcataggag
1201tctgtcgtgt ggggatcact gctgaaggcc tgggcaggga ccactggaac gagatgctgg
1261catacccccg gaagcccatc gcacactggc actccttggt ggaggtaaag aaatccttca
1321aagagggaaa ccctcggttg tgcccaactt tcttgtacaa agtggttggt aagcctatcc
1381ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1441ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)