Construct: ORF ccsbBroad304_05045

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010139.1_s304c1, BRDN0000399069
Derived from:
ccsbBroadEn_05045
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEPTIN10 (151011)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05045
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 151011 SEPTIN10 septin 10 NM_144710.5 100% 100%
2 human 151011 SEPTIN10 septin 10 NM_001321512.2 99% 98.8% 1350_1350delGinsCTCCAATTTTTTG
3 human 151011 SEPTIN10 septin 10 NM_001321513.2 96.9% 96.6% 1_1delAins28;1323_1323delGinsCTCCAATTTTTTG
4 human 151011 SEPTIN10 septin 10 NM_001321514.2 96.6% 96.6% 0_1ins45
5 human 151011 SEPTIN10 septin 10 NM_178584.4 94.9% 94.9% 30_31ins69
6 human 151011 SEPTIN10 septin 10 NM_001321500.2 93.9% 93.8% 30_31ins69;1281_1281delGinsCTCCAATTTTTTG
7 human 151011 SEPTIN10 septin 10 XM_006712317.2 92.8% 92% (many diffs)
8 human 151011 SEPTIN10 septin 10 NM_001321515.2 92.8% 92.7% 0_1ins96;3G>A
9 human 151011 SEPTIN10 septin 10 NM_001321509.2 90.7% 90.7% 0_1ins126
10 human 151011 SEPTIN10 septin 10 NM_001321501.2 89.7% 89.6% 0_1ins126;1224_1224delGinsCTCCAATTTTTTG
11 human 151011 SEPTIN10 septin 10 NM_001321498.2 83.4% 82.5% 1350_1432del;1446_1632del
12 human 151011 SEPTIN10 septin 10 XM_011510703.2 81.7% 80.6% 1_1delAins28;1323_1405del;1419_1605del
13 human 151011 SEPTIN10 septin 10 XM_011510698.2 80.6% 79.7% 0_1ins45;1305_1387del;1401_1587del
14 human 151011 SEPTIN10 septin 10 XM_011510699.2 79.2% 78.3% 30_31ins69;1281_1363del;1377_1563del
15 human 151011 SEPTIN10 septin 10 XM_011510704.3 79% 76.2% 1026_1027ins133;1077_1078ins152
16 human 151011 SEPTIN10 septin 10 XM_011510700.2 75.7% 74.8% 0_1ins126;1224_1306del;1320_1506del
17 human 151011 SEPTIN10 septin 10 NM_001321502.2 74% 71.1% 30_31ins69;957_958ins133;1008_1009ins152
18 human 151011 SEPTIN10 septin 10 NM_001321496.2 70.2% 69.8% (many diffs)
19 human 151011 SEPTIN10 septin 10 NM_001321507.2 69.3% 68.7% (many diffs)
20 human 151011 SEPTIN10 septin 10 NM_001321510.2 63.2% 63.2% 99_100ins501
21 human 151011 SEPTIN10 septin 10 NM_001321499.2 62.2% 62.1% 99_100ins501;849_849delGinsCTCCAATTTTTTG
22 human 151011 SEPTIN10 septin 10 XM_011510701.3 58.6% 57.3% (many diffs)
23 human 151011 SEPTIN10 septin 10 NM_001321505.2 57.4% 57.4% 0_1ins579
24 human 151011 SEPTIN10 septin 10 NM_001321506.2 57.4% 55.9% (many diffs)
25 human 151011 SEPTIN10 septin 10 NM_001321504.2 56.5% 56.3% 0_1ins579;771_771delGinsCTCCAATTTTTTG
26 human 151011 SEPTIN10 septin 10 NM_001321511.2 56.5% 54.8% (many diffs)
27 human 151011 SEPTIN10 septin 10 XM_011510702.2 52.7% 51.8% 99_100ins501;849_931del;945_1131del
28 human 151011 SEPTIN10 septin 10 XR_922870.3 37.7% 1_378del;1404_1405ins133;1608_3120del
29 human 151011 SEPTIN10 septin 10 NM_001321508.2 36.5% 33.7% 0_1ins579;447_448ins133;498_499ins152
30 human 151011 SEPTIN10 septin 10 NM_001321503.2 36.5% 32.1% (many diffs)
31 mouse 103080 Sept10 septin 10 XM_011243255.2 81.9% 80.4% (many diffs)
32 mouse 103080 Sept10 septin 10 NM_001024911.2 81% 81% (many diffs)
33 mouse 103080 Sept10 septin 10 XM_011243256.2 77.5% 75.4% (many diffs)
34 mouse 103080 Sept10 septin 10 NM_001024910.3 76.7% 75.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1428
ORF length:
1362
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ctcctccgag gtggcgcggc acctgctctt tcagtctcac atggcaacga
121aaacaacttg tatgtcttca caaggatcag atgatgaaca gataaaaaga gaaaacattc
181gttcgttgac tatgtctggc catgttggtt ttgagagttt gcctgatcag ctggtgaaca
241gatccattca gcaaggtttc tgctttaata ttctctgtgt gggggaaact ggaattggaa
301aatcaacact gattgacaca ttgtttaata ctaattttga agactatgaa tcctcacatt
361tttgcccaaa tgttaaactt aaagctcaga catatgaact ccaggaaagt aatgttcaat
421tgaaattgac cattgtgaat acagtgggat ttggtgacca aataaataaa gaagagagct
481accaaccaat agttgactac atagatgctc agtttgaggc ctatctccaa gaagaactga
541agattaagcg ttctctcttt acctaccatg attctcgcat ccatgtgtgt ctctacttca
601tttcaccgac aggccactct ctgaagacac ttgatctctt aaccatgaag aaccttgaca
661gcaaggtaaa cattatacca gtgattgcca aagcagatac ggtttctaaa actgaattac
721agaagtttaa gatcaagctc atgagtgaat tggtcagcaa tggcgtccag atataccagt
781tcccaacgga tgatgacact attgctaagg tcaacgctgc aatgaatgga cagttgccgt
841ttgctgttgt gggaagtatg gatgaggtaa aagtcggaaa caagatggtc aaagctcgcc
901agtacccttg gggtgttgta caagtggaaa atgaaaacca ctgtgacttt gtaaagctgc
961gggaaatgct catttgtaca aatatggagg acctgcgaga gcagacccat accaggcact
1021atgagcttta caggcgctgc aaactggagg aaatgggctt tacagatgtg ggcccagaaa
1081acaagccagt cagtgttcaa gagacctatg aagccaaaag acatgagttc catggtgaac
1141gtcagaggaa ggaagaagaa atgaaacaga tgtttgtgca gcgagtaaag gagaaagaag
1201ccatattgaa agaagctgag agagagctac aggccaaatt tgagcacctt aagagacttc
1261accaagaaga gagaatgaag cttgaagaaa agagaagact tttggaagaa gaaataattg
1321ctttctctaa aaagaaagct acctccgaga tatttcacag ccagtccttt ctggcaacag
1381gcagcaacct gaggaaggac aaggaccgta agaactccaa ttttttgtac ccaactttct
1441tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
1501aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

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