Construct: ORF ccsbBroad304_05053
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014347.1_s304c1, BRDN0000409305
- Derived from:
- ccsbBroadEn_05053
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTC14 (151613)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_05053
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 151613 | TTC14 | tetratricopeptide repeat do... | NM_133462.4 | 100% | 100% | |
| 2 | human | 151613 | TTC14 | tetratricopeptide repeat do... | XM_017005739.2 | 93.2% | 93.2% | 699_700ins156 |
| 3 | human | 151613 | TTC14 | tetratricopeptide repeat do... | NM_001288582.2 | 81% | 74.2% | (many diffs) |
| 4 | human | 151613 | TTC14 | tetratricopeptide repeat do... | XR_427362.4 | 80.4% | 1_99del;1387_1388insAGAAATCTTTGGAATTA;2393_2832del | |
| 5 | human | 151613 | TTC14 | tetratricopeptide repeat do... | XR_001740030.2 | 78.6% | 1_99del;1389_1894del;2897_2898insGGAAATAAGTCAAAAAAT | |
| 6 | human | 151613 | TTC14 | tetratricopeptide repeat do... | XM_024453361.1 | 67.5% | 67.5% | 0_1ins750 |
| 7 | human | 151613 | TTC14 | tetratricopeptide repeat do... | XR_001740029.2 | 61.2% | (many diffs) | |
| 8 | human | 151613 | TTC14 | tetratricopeptide repeat do... | XM_017005740.2 | 56.3% | 55.8% | 1288_1289insAGAAATCTTTGGAATTA;1302_1303ins991 |
| 9 | human | 151613 | TTC14 | tetratricopeptide repeat do... | NM_001042601.3 | 55.9% | 55.8% | (many diffs) |
| 10 | mouse | 67120 | Ttc14 | tetratricopeptide repeat do... | NM_027619.4 | 87.1% | 86.8% | (many diffs) |
| 11 | mouse | 67120 | Ttc14 | tetratricopeptide repeat do... | XM_006535524.2 | 84.2% | 83.8% | (many diffs) |
| 12 | mouse | 67120 | Ttc14 | tetratricopeptide repeat do... | NM_001290500.1 | 80.7% | 80.4% | (many diffs) |
| 13 | mouse | 67120 | Ttc14 | tetratricopeptide repeat do... | XM_006535522.2 | 78.1% | 77.6% | (many diffs) |
| 14 | mouse | 67120 | Ttc14 | tetratricopeptide repeat do... | XR_880651.2 | 60.9% | (many diffs) | |
| 15 | mouse | 67120 | Ttc14 | tetratricopeptide repeat do... | XM_011249706.2 | 50.3% | 50.1% | (many diffs) |
| 16 | mouse | 67120 | Ttc14 | tetratricopeptide repeat do... | NM_025978.4 | 50% | 51.9% | (many diffs) |
| 17 | mouse | 67120 | Ttc14 | tetratricopeptide repeat do... | XM_011249707.2 | 48.7% | 50.1% | (many diffs) |
| 18 | mouse | 67120 | Ttc14 | tetratricopeptide repeat do... | NM_001290502.1 | 48.2% | 46.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2376
- ORF length:
- 2310
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga ccgggacctt ttgcggcagt cgctaaattg ccacgggtcg tctttgctct 121 ctctacttcg gagcgaacag caggacaatc cacacttccg tagcctcctg gggtcggccg 181 ccgagccagc ccggggcccg ccgccccagc acccgttgca gggcagaaaa gagaagagag 241 ttgacaacat cgagatacag aaattcatct ccaaaaaagc ggatctgctt tttgcacttt 301 cctggaaatc agatgcacct gcaacttctg aaattaatga agacagtgaa gatcattatg 361 caatcatgcc acctttagag caattcatgg agatacctag tatggatcgg agagagctgt 421 ttttccgaga tattgagcgt ggtgatatag tgattggaag aattagttct attcgggaat 481 tcggtttttt catggtgttg atctgtttag gaagtggtat catgagagat atagcccact 541 tagaaatcac agctctttgt cccttaagag atgtgccttc tcacagtaac catggggatc 601 ctttatcata ttaccaaact ggtgacatca ttcgagctgg aatcaaggat attgacagat 661 accatgaaaa gctagcagta tctctgtata gctcttctct tccaccacac ctatctggta 721 ttaaattagg tgtaattagc tctgaagagc ttcctttata ctacaggaga agtgttgagc 781 taaatagcaa ttctttggag tcctatgaaa atgtcatgca gagttccttg ggatttgtta 841 atccaggagt agttgaattc cttctagaaa aactaggaat agatgaatct aatccaccat 901 ctttaatgag aggcctacaa agcaaaaatt tctctgaaga tgattttgct tctgcattga 961 gaaaaaaaca atccgcatct tgggctttaa aatgtgtgaa gatcggagtt gactatttta 1021 aagttggacg ccatgtggat gctatgaatg aatacaataa agctttggaa atagacaaac 1081 aaaacgtgga agctttggta gctcgtggag cattatatgc gacaaaagga agtttgaaca 1141 aagcaataga agattttgag cttgcattag aaaactgtcc aactcacaga aatgcaagaa 1201 aatacctctg ccagacactt gtagagagag gaggacagtt agaagaagaa gaaaagtttt 1261 taaatgctga aagttactat aagaaagctt tggctttgga tgagactttt aaagatgcag 1321 aggatgcttt gcagaaactt cataaatata tgcagaaatc tttggaatta agagaaaaac 1381 aagctgaaaa ggaagaaaag cagaaaacaa agaaaataga aacaagtgca gaaaagttgc 1441 gtaagctctt aaaagaagag aagaggctaa agaagaaaag aagaaaatca acttcttctt 1501 caagtgtttc ttctgctgat gaatcagtgt cttcatcatc atcctcttcc tcttctggtc 1561 acaaaaggca taagaaacat aagaggaacc gttcagagtc ttctcgcagt tccagaaggc 1621 attcatctag ggcatcctca aatcagatag atcagaatag gaaagatgag tgctacccag 1681 ttccagctaa tacttcagca tcttttctta accataaaca agaagtggag aaactactgg 1741 ggaagcagga taggttacag tatgaaaaga cacagataaa agagaaagat agatgccctc 1801 tctcttcatc ttcacttgaa ataccggatg attttggagg taggtctgaa gatccaagag 1861 atttttataa cagctataaa acccaagcag gtagtagcaa aacagaaaag ccatataaat 1921 cagaaagaca tttttccagt agaagaaatt cctcagattc cttctgtagg aattcagagg 1981 acaagattta tggttatagg agatttgaaa aggatataga gggaagaaaa gagcactata 2041 gaaggtggga accaggttct gtgaggcatt ctacctcacc agcaagctca gaatactctt 2101 ggaagtcagt tgagaaatac aaaaaatacg ctcactctgg atcacgtgat ttcagtagac 2161 atgagcaaag ataccgttta aatacaaatc aaggagaata tgaaagagag gacaattatg 2221 gggaggatat caaaacagag gttccagaag aagatgcact aagtagcaaa gaacactcag 2281 aaagcagtgt taagaaaaat ttacctcaga atttactgaa tatatttaat cagatagctg 2341 aatttgaaaa agaaaaagga aataagtcaa aaaattaccc aactttcttg tacaaagtgg 2401 ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg 2461 ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta