Construct: ORF ccsbBroad304_05076

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013997.1_s304c1, BRDN0000403701
Derived from:
ccsbBroadEn_05076
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRELID2 (153768)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05076
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 153768 PRELID2 PRELI domain containing 2 NM_138492.6 100% 100%
2 human 153768 PRELID2 PRELI domain containing 2 NM_205846.3 83.6% 83.6% 1_87del
3 human 153768 PRELID2 PRELI domain containing 2 NM_182960.4 78.3% 78.3% 1_87del;205_240del
4 human 153768 PRELID2 PRELI domain containing 2 XM_017009129.1 78.3% 78.3% 1_87del;205_240del
5 human 153768 PRELID2 PRELI domain containing 2 XM_017009130.1 78.3% 78.3% 1_87del;205_240del
6 human 153768 PRELID2 PRELI domain containing 2 XM_017009131.1 78.3% 78.3% 1_87del;205_240del
7 human 153768 PRELID2 PRELI domain containing 2 XM_017009128.1 72% 67% (many diffs)
8 human 153768 PRELID2 PRELI domain containing 2 XM_017009127.1 69.5% 64.8% (many diffs)
9 human 153768 PRELID2 PRELI domain containing 2 XM_017009135.1 57.6% 53.6% 1_87del;367_368ins106;393_394ins32
10 human 153768 PRELID2 PRELI domain containing 2 XM_017009132.1 53.9% 50.2% (many diffs)
11 human 153768 PRELID2 PRELI domain containing 2 XM_017009133.1 53.9% 50.2% (many diffs)
12 human 153768 PRELID2 PRELI domain containing 2 XM_017009134.1 53.9% 50.2% (many diffs)
13 human 153768 PRELID2 PRELI domain containing 2 XR_001742021.1 37.9% (many diffs)
14 human 153768 PRELID2 PRELI domain containing 2 XR_001742019.1 36.7% (many diffs)
15 human 153768 PRELID2 PRELI domain containing 2 XR_001742024.2 32.5% (many diffs)
16 human 153768 PRELID2 PRELI domain containing 2 XR_001742022.2 31.5% (many diffs)
17 human 153768 PRELID2 PRELI domain containing 2 XR_001742025.1 29.2% (many diffs)
18 mouse 77619 Prelid2 PRELI domain containing 2 NM_029942.1 73.8% 74.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
510
ORF length:
444
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga taaaaatgtc atctcagtaa aaatcatgga ggaaaaaaga gatgaatcaa
121caggggtcat ctacagaaag aggattgcaa tctgtcagaa cgtggttcca gaaattttaa
181ggaaggtgag cattttgaaa gtacctaata tccaattaga agaggagtca tggctcaatc
241ctcgggaaag aaacatggcc atacggagtc actgccttac gtggacacag tatgcatcca
301tgaaggaaga gtctgtcttc cgggaaagta tggaaaaccc aaattggaca gagttcattc
361aaagaggcag gatttcaatc acaggggttg gatttctcaa ctgtgtttta gaaacttttg
421ccagcacatt cttacgacag ggagcccaga agggaattag aatcatggag atgctgctaa
481aggaacagtg tggtgccccc ttagctgaat acccaacttt cttgtacaaa gtggttggta
541agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
601ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)