Transcript: Human XR_001742025.1

PREDICTED: Homo sapiens PRELI domain containing 2 (PRELID2), transcript variant X11, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PRELID2 (153768)
Length:
1048
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001742025.1
NBCI Gene record:
PRELID2 (153768)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001742025.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000254565 AGAGTCTGTCTTCCGGGAAAG pLKO_005 484 3UTR 100% 6.000 4.800 N Prelid2 n/a
2 TRCN0000241577 AGAACGTGGTTCCAGAAATTT pLKO_005 297 3UTR 100% 15.000 10.500 N PRELID2 n/a
3 TRCN0000241576 GAAAGTACCTAATATCCAATT pLKO_005 373 3UTR 100% 10.800 7.560 N PRELID2 n/a
4 TRCN0000172994 GCTCAATCCTCGGGAAAGAAA pLKO.1 409 3UTR 100% 5.625 3.938 N PRELID2 n/a
5 TRCN0000172736 GAAGAGGAGTCATGGCTCAAT pLKO.1 395 3UTR 100% 4.950 3.465 N PRELID2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001742025.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05076 pDONR223 100% 29.2% None (many diffs) n/a
2 ccsbBroad304_05076 pLX_304 0% 29.2% V5 (many diffs) n/a
3 TRCN0000478938 ATCTGGGATGTCCCTGGAATAAGA pLX_317 84.9% 29.2% V5 (many diffs) n/a
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