Construct: ORF ccsbBroad304_05690

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016342.1_s304c1, BRDN0000462143
Derived from:
ccsbBroadEn_05690
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIM6-TRIM34 (445372)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05690
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 445372 TRIM6-TRIM34 TRIM6-TRIM34 readthrough NM_001003819.4 100% 100%
2 human 53840 TRIM34 tripartite motif containing 34 NM_001003827.1 57.9% 57.9% 0_1ins1062
3 human 53840 TRIM34 tripartite motif containing 34 NM_021616.6 57.9% 57.9% 0_1ins1062
4 human 117854 TRIM6 tripartite motif containing 6 NM_001003818.3 56.2% 51.1% (many diffs)
5 human 117854 TRIM6 tripartite motif containing 6 NM_058166.5 52.9% 47.8% (many diffs)
6 human 117854 TRIM6 tripartite motif containing 6 NM_001198644.2 32.3% 27.2% (many diffs)
7 human 117854 TRIM6 tripartite motif containing 6 NM_001198645.2 32.3% 27.2% (many diffs)
8 human 53840 TRIM34 tripartite motif containing 34 NM_130390.2 31.7% 30.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2595
ORF length:
2526
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtgcgggtca gagaggattc tacaggcagg aaacatctta gaaatcaggg
121ttgggcaggc aggagccagg agagtagcta caatgacttc accagtactg gtggacatac
181gagaagaggt gacctgccct atctgcctgg agctcctaac agaacccctg agcatagact
241gtggccacag cttctgccaa gcctgcatca caccaaatgg cagggaatca gtgattggtc
301aagaagggga aagaagctgc cctgtgtgcc agaccagcta ccagccaggg aacctgcggc
361ctaatcggca tctggccaac atagtgaggc ggctcagaga ggtagtgttg ggccctggga
421agcagctgaa agcagttctt tgtgcagacc atggagaaaa actgcagctc ttctgtcagg
481aggatgggaa ggtcatttgc tggctttgtg agcggtctca ggagcaccgt ggtcaccaca
541cgttcctcgt ggaggaggtt gcccaggagt accaggagaa gtttcaggag tctctaaaga
601agctgaagaa cgaggagcag gaagctgaga agctaacagc ttttatcaga gagaagaaaa
661catcctggaa gaatcagatg gagcctgaga gatgcaggat ccagacagag tttaatcagc
721tgcgaaatat cctagacaga gtggagcaac gggagctgaa aaagctggaa caggaagaga
781agaaggggct acgaattata gaagaggctg agaatgatct ggtccaccag acccagtcgc
841tgcgagagct catctcggat ctggagcgtc gatgtcaggg gtcaacaatg gagctgctgc
901aggatgtgag tgatgtcaca gaaaggagtg agttctggac cctgaggaag ccagaagctc
961tccctacaaa gctgagaagt atgttccgag ccccagatct gaaaaggatg ctgcgagtgt
1021gtagagagct gacagatgtc caaagctact gggccatcca ggggtcttta accagaagag
1081agaggagagc ctcaggagtt aggaccagaa gaagccaggg aagcagtgca atggcttcaa
1141aaatcttgct taacgtacaa gaggaggtga cctgtcccat ctgcctggag ctgttgacag
1201aacccttgag tctagactgt ggccacagcc tctgccgagc ctgcatcact gtgagcaaca
1261aggaggcagt gaccagcatg ggaggaaaaa gcagctgtcc tgtgtgtggt atcagttact
1321catttgaaca tctacaggct aatcagcatc tggccaacat agtggagaga ctcaaggagg
1381tcaagttgag cccagacaat gggaagaaga gagatctctg tgatcatcat ggagagaaac
1441tcctactctt ctgtaaggag gataggaaag tcatttgctg gctttgtgag cggtctcagg
1501agcaccgtgg tcaccacaca gtcctcacgg aggaagtatt caaggaatgt caggagaaac
1561tccaggcagt cctcaagagg ctgaagaagg aagaggagga agctgagaag ctggaagctg
1621acatcagaga agagaaaact tcctggaagt atcaggtaca aactgagaga caaaggatac
1681aaacagaatt tgatcagctt agaagcatcc taaataatga ggagcagaga gagctgcaaa
1741gattggaaga agaagaaaag aagacgctgg ataagtttgc agaggctgag gatgagctag
1801ttcagcagaa gcagttggtg agagagctca tctcagatgt ggagtgtcgg agtcagtggt
1861caacaatgga gctgctgcag gacatgagtg gaatcatgaa atggagtgag atctggaggc
1921tgaaaaagcc aaaaatggtt tccaagaaac tgaagactgt attccatgct ccagatctga
1981gtaggatgct gcaaatgttt agagaactga cagctgtccg gtgctactgg gtggatgtca
2041cactgaattc agtcaaccta aatttgaatc ttgtcctttc agaagatcag agacaagtga
2101tatctgtgcc aatttggcct tttcagtgtt ataattatgg tgtcttggga tcccaatatt
2161tctcctctgg gaaacattac tgggaagtgg acgtgtccaa gaaaactgcc tggatcctgg
2221gggtatactg tagaacatat tcccgccata tgaagtatgt tgttagaaga tgtgcaaatc
2281gtcaaaatct ttacaccaaa tacagacctc tatttggcta ctgggttata gggttacaga
2341ataaatgtaa gtatggtgtc tttgaagagt ctttgtcctc tgatcccgag gttttgactc
2401tctccatggc tgtgcctccc tgccgtgttg gggttttcct cgactatgaa gcaggcattg
2461tctcattttt caatgtcaca agccatggct ccctcattta caagttctct aaatgttgct
2521tttctcagcc tgtttatcca tatttcaatc cttggaactg tccagctccc atgactctat
2581gcccaccaag ctctttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc
2641ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
2701cgacaatcaa cctctggatt a

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