Construct: ORF ccsbBroad304_06550

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003606.1_s304c1, BRDN0000403904
Derived from:
ccsbBroadEn_06550
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAG (4099)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06550
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4099 MAG myelin associated glycoprotein NM_002361.4 99.8% 100% 399C>T;1209C>T
2 human 4099 MAG myelin associated glycoprotein NM_001199216.1 95.8% 96% 0_1ins75;324C>T;1134C>T
3 human 4099 MAG myelin associated glycoprotein NM_080600.2 91.8% 91.6% (many diffs)
4 mouse 17136 Mag myelin-associated glycoprotein NM_001346084.1 87.4% 94.2% (many diffs)
5 mouse 17136 Mag myelin-associated glycoprotein NM_001346085.1 87.4% 94.2% (many diffs)
6 mouse 17136 Mag myelin-associated glycoprotein XM_006539590.2 87.4% 94.2% (many diffs)
7 mouse 17136 Mag myelin-associated glycoprotein XM_006539591.3 87.4% 94.2% (many diffs)
8 mouse 17136 Mag myelin-associated glycoprotein XM_011250438.2 87.4% 94.2% (many diffs)
9 mouse 17136 Mag myelin-associated glycoprotein XM_011250439.2 87.4% 94.2% (many diffs)
10 mouse 17136 Mag myelin-associated glycoprotein XM_011250440.2 87.4% 94.2% (many diffs)
11 mouse 17136 Mag myelin-associated glycoprotein XM_017322007.1 87.4% 94.2% (many diffs)
12 mouse 17136 Mag myelin-associated glycoprotein NM_001346089.1 81.2% 87.7% (many diffs)
13 mouse 17136 Mag myelin-associated glycoprotein NM_001346086.1 81.1% 86.2% (many diffs)
14 mouse 17136 Mag myelin-associated glycoprotein NM_001346087.1 81.1% 86.2% (many diffs)
15 mouse 17136 Mag myelin-associated glycoprotein NM_001346088.1 81.1% 86.2% (many diffs)
16 mouse 17136 Mag myelin-associated glycoprotein NM_010758.3 81.1% 86.2% (many diffs)
17 mouse 17136 Mag myelin-associated glycoprotein XM_011250441.2 81.1% 86.2% (many diffs)
18 mouse 17136 Mag myelin-associated glycoprotein XM_017322008.1 81.1% 86.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1944
ORF length:
1878
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgat attcctcacg gcactgcctc tgttctggat tatgatttca gcctcccgag
121ggggtcactg gggtgcctgg atgccctcgt ccatctcggc cttcgaaggc acgtgcgtct
181ccatcccctg ccgctttgac ttcccggatg agctgcggcc cgctgtggtg catggtgtct
241ggtacttcaa tagcccctac cccaagaact accccccggt ggtcttcaag tcgcgcaccc
301aagtagtcca cgagagcttc cagggccgca gccgcctcct gggggacctg ggcctgcgaa
361actgcaccct cctgctcagc aacgtcagcc ccgagctggg cgggaagtac tacttccgtg
421gggacctggg cggctacaac cagtacacct tctcagagca cagtgtcctg gatatcgtca
481acacccccaa catcgtggtg cccccagagg tggtggcagg cacggaggtg gaggtcagct
541gcatggtgcc ggacaactgc ccagagctgc gccctgagct gagctggctg ggccacgagg
601ggctggggga gcccgctgtg ctgggccggc tgcgggagga cgagggcacc tgggtgcagg
661tgtcactgct gcacttcgtg cccacgaggg aggccaacgg ccacaggctg ggctgccagg
721cctccttccc caacaccacc ctgcagttcg agggctacgc cagcatggac gtcaagtacc
781ccccggtgat tgtggagatg aactcctcgg tggaggccat cgagggctcc cacgtgagcc
841tgctctgtgg ggctgacagc aaccccccgc cgctgctgac ctggatgcgg gacgggacag
901tcctccggga ggcggtggcc gagagcctgc tcctggagct ggaggaggtg acccccgccg
961aagacggcgt ctatgcctgc ctggccgaga atgcctatgg ccaggacaac cgcaccgtgg
1021ggctcagtgt catgtatgca ccctggaagc caacagtgaa cgggacaatg gtggccgtag
1081agggggagac ggtctctatc ttgtgctcca cacagagcaa cccggaccct attctcacca
1141tcttcaagga gaagcagatc ctgtccacgg tcatctacga gagcgagctg cagctggagc
1201tgccggccgt gtcacccgag gatgatggag agtactggtg tgtggctgag aaccagtatg
1261gccagagggc cactgccttc aacctgtctg tggagttcgc ccctgtgctc ctcctggagt
1321cccactgcgc ggcagcccga gacacggtgc agtgcctgtg cgtggtgaag tccaacccgg
1381agccgtccgt ggcctttgag ctgccatcgc gcaatgtgac cgtgaacgag agcgagcggg
1441agttcgtgta ctcggagcgc agcggcctcg tgctcaccag catcctcacg ctgcgggggc
1501aggcccaggc cccgccccgc gtcatctgca ccgcgaggaa cctctatggc gccaagagcc
1561tggagctgcc cttccaggga gcccatcgac tgatgtgggc caagatcggg cctgtgggcg
1621ccgtggtcgc ctttgccatc ctgattgcca tcgtctgcta cattacccag acacgcagga
1681aaaagaacgt gacagagagc cccagcttct cggcagggga caaccctccc gtcctgttca
1741gcagcgactt ccgcatctct ggggcaccag agaagtacga gagcgagagg cgcctgggat
1801ctgagaggag gctgctgggc cttcggggtg agcccccaga gctggacctg agctattctc
1861actcggacct ggggaaacgg cccaccaagg acagctacac gctgacggag gagctagctg
1921agtatgctga aatccgggtc aagtgcccaa ctttcttgta caaagtggtt ggtaagccta
1981tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
2041gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)