Construct: ORF ccsbBroad304_06605
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018410.1_s304c1, BRDN0000399224
- Derived from:
- ccsbBroadEn_06605
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRIM37 (4591)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_06605
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001005207.5 | 99.9% | 99.8% | 322A>G;1264T>C |
| 2 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_015294.6 | 99.8% | 99.8% | 322A>G;1264T>C;2892G>A |
| 3 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_005257385.1 | 99% | 98.9% | 322A>G;1264T>C;2694_2720del |
| 4 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001353084.2 | 98.9% | 98.9% | (many diffs) |
| 5 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024667.1 | 98.1% | 98.1% | 322A>G;806_807ins51;1213T>C |
| 6 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001353086.2 | 98.1% | 98.1% | (many diffs) |
| 7 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024663.2 | 97.7% | 97.6% | 322A>G;1264T>C;2893_2958del |
| 8 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_011524832.2 | 97.3% | 97.3% | 322A>G;1264T>C;2892_2967delinsA |
| 9 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024664.1 | 97.2% | 97.2% | (many diffs) |
| 10 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024662.1 | 96.8% | 96.7% | (many diffs) |
| 11 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_011524831.1 | 96.4% | 96.4% | (many diffs) |
| 12 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001320987.3 | 96.3% | 96.3% | (many diffs) |
| 13 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001320989.3 | 95.8% | 95.8% | 322A>G;1264T>C;2691_2692ins117 |
| 14 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001320988.3 | 95.8% | 95.8% | (many diffs) |
| 15 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001353082.2 | 95.4% | 95.4% | (many diffs) |
| 16 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_011524833.1 | 94.7% | 94.7% | (many diffs) |
| 17 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024669.2 | 94.6% | 94.6% | (many diffs) |
| 18 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024665.1 | 93.9% | 93.9% | (many diffs) |
| 19 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_011524836.1 | 93.4% | 93.4% | (many diffs) |
| 20 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_011524834.1 | 93% | 93% | (many diffs) |
| 21 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024670.2 | 92.3% | 92.3% | (many diffs) |
| 22 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001353085.2 | 83.9% | 84% | 0_1ins462;802T>C;2430G>A |
| 23 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024671.2 | 83.9% | 84% | 0_1ins462;802T>C;2430G>A |
| 24 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001320990.3 | 83.2% | 83.2% | (many diffs) |
| 25 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_024450765.1 | 81.8% | 81.9% | 0_1ins462;802T>C;2430_2505delinsA |
| 26 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024672.1 | 79.9% | 79.9% | (many diffs) |
| 27 | human | 4591 | TRIM37 | tripartite motif containing 37 | NM_001353083.2 | 74.5% | 74.5% | 0_1ins735;529T>C;2157G>A |
| 28 | human | 4591 | TRIM37 | tripartite motif containing 37 | XM_017024673.2 | 71.9% | 72% | (many diffs) |
| 29 | human | 4591 | TRIM37 | tripartite motif containing 37 | NR_148347.2 | 64% | (many diffs) | |
| 30 | human | 4591 | TRIM37 | tripartite motif containing 37 | NR_148346.2 | 63.7% | (many diffs) | |
| 31 | mouse | 68729 | Trim37 | tripartite motif-containing 37 | NM_197987.2 | 88.4% | 92.3% | (many diffs) |
| 32 | mouse | 68729 | Trim37 | tripartite motif-containing 37 | NM_001363026.1 | 87% | 86.9% | (many diffs) |
| 33 | mouse | 68729 | Trim37 | tripartite motif-containing 37 | XM_006534072.3 | 86.4% | 90.7% | (many diffs) |
| 34 | mouse | 68729 | Trim37 | tripartite motif-containing 37 | XM_011249212.3 | 86.4% | 90.7% | (many diffs) |
| 35 | mouse | 68729 | Trim37 | tripartite motif-containing 37 | NM_001363027.1 | 85.1% | 89.1% | (many diffs) |
| 36 | mouse | 68729 | Trim37 | tripartite motif-containing 37 | NM_001363028.1 | 84.6% | 88.9% | (many diffs) |
| 37 | mouse | 68729 | Trim37 | tripartite motif-containing 37 | NM_001363025.1 | 84.3% | 88% | (many diffs) |
| 38 | mouse | 68729 | Trim37 | tripartite motif-containing 37 | XM_011249210.2 | 83% | 82.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2958
- ORF length:
- 2892
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga tgaacagagc gtggagagca ttgctgaggt tttccgatgt ttcatttgta 121 tggagaaatt gcgggatgca cgcctgtgtc ctcattgctc caaactgtgt tgtttcagct 181 gtattaggcg ctggctgaca gagcagagag ctcaatgtcc tcattgccgt gctccactcc 241 agctacgaga actagtaaat tgtcgttggg cagaagaagt aacacaacag cttgatactc 301 ttcaactctg cagtctcacc aaacatgaag aaaatgaaaa ggacaaatgt gaaaatcacc 361 atgaaaaact tagtgtattt tgctgggctt gtaagaagtg tatctgccat cagtgtgcac 421 tttggggagg aatgcatggc ggacatacct ttaaaccttt ggcagaaatt tatgagcaac 481 acgtcactaa agtgaatgaa gaggtagcca aacttcgtcg gcgtctcatg gaactgatca 541 gcttagttca agaagtggaa aggaatgtag aagctgtaag aaatgcaaaa gatgagcgtg 601 ttcgggaaat taggaatgca gtggagatga tgattgcacg gttagacaca cagctgaaga 661 ataagcttat aacactgatg ggtcagaaga catctctaac ccaagaaaca gagcttttgg 721 aatccttact tcaggaggtg gagcaccagt tgcggtcttg tagtaagagt gagttgatat 781 ctaagagctc agagatcctt atgatgtttc agcaagttca tcggaagccc atggcatctt 841 ttgttaccac tcctgttcca ccagacttta ccagtgaatt agtgccatct tacgattcag 901 ctacttttgt tttagagaat ttcagcactt tgcgtcagag agcagatcct gtttacagtc 961 cacctcttca agtttcagga ctttgctgga ggttaaaagt ttacccagat ggaaatggag 1021 ttgtgcgagg ttactactta tctgtgtttc tggagctctc agctggcttg cctgaaactt 1081 ctaaatatga atatcgtgta gagatggttc accagtcctg taatgatcct acaaaaaata 1141 tcattcgaga atttgcatct gactttgaag ttggagaatg ctggggctat aatagatttt 1201 tccgtttgga cttactcgca aatgaaggat acttgaatcc acaaaatgat acagtgattt 1261 taaggtttca ggtacgttca ccaactttct ttcaaaaatc ccgggaccag cattggtaca 1321 ttactcagct ggaagctgca cagactagtt atatccaaca aataaacaac cttaaagaga 1381 gacttactat tgagctgtct cgaactcaga agtcaagaga tttgtcacca ccagataacc 1441 atcttagccc ccaaaatgat gatgctctgg agacacgagc taagaagtct gcatgctctg 1501 acatgcttct cgaaggtggt cctactacag cttctgtaag agaggccaaa gaggatgaag 1561 aagatgagga gaagattcag aatgaagatt atcatcacga gctttcagat ggagatctgg 1621 atctggatct tgtttatgag gatgaagtaa atcagctcga tggcagcagt tcctctgcta 1681 gttccacagc aacaagtaat acagaagaaa atgatattga tgaagaaact atgtctggag 1741 aaaatgatgt ggaatataac aacatggaat tagaagaggg agaactcatg gaagatgcag 1801 ctgctgcagg acccgcaggt agtagccatg gttatgtggg ttccagtagt agaatatcaa 1861 gaagaacaca tttatgctcc gctgctacca gtagtttact agacattgat ccattaattt 1921 taatacattt gttggacctt aaggaccgga gcagtataga aaatttgtgg ggcttacagc 1981 ctcgcccacc tgcttcactt ctgcagccca cagcatcata ttctcgaaaa gataaagacc 2041 aaaggaagca acaggcaatg tggcgagtgc cctctgattt aaagatgcta aaaagactca 2101 aaactcaaat ggccgaagtt cgatgtatga aaactgatgt aaagaataca ctttcagaaa 2161 taaaaagcag cagtgctgct tctggagaca tgcagacaag ccttttttct gctgaccagg 2221 cagctctggc tgcatgtgga actgaaaact ctggcagatt gcaggatttg ggaatggaac 2281 tcctggcaaa gtcatcagtt gccaattgtt acatacgaaa ctccacaaat aagaagagta 2341 attcgcccaa gccagctcga tccagtgtag caggtagtct atcacttcga agagcagtgg 2401 accctggaga aaatagtcgt tcaaagggag actgtcagac tctgtctgaa ggctccccag 2461 gaagctctca gtctgggagc aggcacagtt ctccccgagc cttgatacat ggcagtatcg 2521 gtgatattct gccaaaaact gaagaccggc agtgtaaagc tttggattca gatgctgttg 2581 tggttgcagt tttcagtggc ttgcctgcgg ttgagaaaag gaggaaaatg gtcaccttgg 2641 gggctaatgc taaaggaggt catctggaag gactgcagat gactgatttg gaaaataatt 2701 ctgaaactgg agagttacag cctgtactac ctgaaggagc ttcagctgcc cctgaagaag 2761 gaatgagtag cgacagtgac attgaatgtg acactgagaa tgaggagcag gaagagcata 2821 ccagtgtggg cgggtttcac gactccttca tggtcatgac acagcccccg gatgaagata 2881 cacattccag ttttcctgat ggtgaacaaa taggccctga agatctcagc ttcaatacag 2941 atgaaaatag tggaagatac ccaactttct tgtacaaagt ggttggtaag cctatcccta 3001 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 3061 agtcgacaat caacctctgg atta