Construct: ORF ccsbBroad304_06637

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002616.1_s304c1, BRDN0000410843
Derived from:
ccsbBroadEn_06637
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
NFKB1 (4790)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06637
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4790 NFKB1 nuclear factor kappa B subu... NM_003998.4 87.5% 82.7% (many diffs)
2 human 4790 NFKB1 nuclear factor kappa B subu... XM_024454068.1 87.5% 82.7% (many diffs)
3 human 4790 NFKB1 nuclear factor kappa B subu... NM_001165412.2 87.4% 82.5% (many diffs)
4 human 4790 NFKB1 nuclear factor kappa B subu... NM_001319226.2 87.4% 82.5% (many diffs)
5 human 4790 NFKB1 nuclear factor kappa B subu... XM_024454067.1 86.8% 82% (many diffs)
6 human 4790 NFKB1 nuclear factor kappa B subu... XM_011532006.2 86.7% 81.9% (many diffs)
7 human 4790 NFKB1 nuclear factor kappa B subu... XM_024454069.1 81.6% 76.5% (many diffs)
8 mouse 18033 Nfkb1 nuclear factor of kappa lig... XM_006501106.2 77% 77.4% (many diffs)
9 mouse 18033 Nfkb1 nuclear factor of kappa lig... NM_008689.2 74.7% 71.4% (many diffs)
10 mouse 18033 Nfkb1 nuclear factor of kappa lig... XM_006501107.1 63.5% 60.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2532
ORF length:
2466
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc agaagatgat ccatatttgg gaaggcctga acaaatgttt catttggatc
121cttctttgac tcatacaata tttaatccag aagtatttca accacagatg gcactgccaa
181cagcagatgg cccatacctt caaatattag agcaacctaa acagagagga tttcgtttcc
241gttatgtatg tgaaggccca tcccatggtg gactacctgg tgcctctagt gaaaagaaca
301agaagtctta ccctcaggtc aaaatctgca actatgtggg accagcaaag gttattgttc
361agttggtcac aaatggaaaa aatatccacc tgcatgccca cagcctggtg ggaaaacact
421gtgaggatgg gatctgcact gtaactgctg gacccaagga catggtggtc ggcttcgcaa
481acctgggtat acttcatgtg acaaagaaaa aagtatttga aacactggaa gcacgaatga
541cagaggcgtg tataaggggc tataatcctg gactcttggt gcaccctgac cttgcctatt
601tgcaagcaga aggtggaggg gaccggcagc tgggagatcg ggaaaaagag ctaatccgcc
661aagcagctct gcagcagacc aaggagatgg acctcagcgt ggtgcggctc atgtttacag
721cttttcttcc ggatagcact ggcagcttca caaggcgcct ggaacccgtg gtatcagacg
781ccatctatga cagtaaagcc cccaatgcat ccaacttgaa aattgtaaga atggacagga
841cagctggatg tgtgactgga ggggaggaaa tttatcttct ttgtgacaaa gttcagaaag
901atgacatcca gattcgattt tatgaagagg aagaaaatgg tggagtctgg gaaggatttg
961gagatttttc ccccacagat gttcatagac aatttgccat tgtcttcaaa actccaaagt
1021ataaagatat taatattaca aaaccagcct ctgtgtttgt ccagcttcgg aggaaatctg
1081acttggaaac tagtgaacca aaacctttcc tctactatcc tgaaatcaaa gataaagaag
1141aagtgcagag gaaacgtcag aagctcatgc ccaatttttc ggatagtttc ggcggtggta
1201gtggtgccgg agctggaggc ggaggcatgt ttggtagtgg cggtggagga gggggcactg
1261gaagtacagg tccagggtat agcttcccac actatggatt tcctacttat ggtgggatta
1321ctttccatcc tggaactact aaatctaatg ctgggatgaa gcatggaacc atggacactg
1381aatctaaaaa ggaccctgaa ggttgtgaca aaagtgatga caaaaacact gtaaacctct
1441ttgggaaagt tattgaaacc acagagcaag atcaggagcc cagcgaggcc accgttggga
1501atggtgaggt cactctaacg tatgcaacag gaacaaaaga agagagtgct ggagttcagg
1561ataacctctt tctagagaag gctatgcagc ttgcaaagag gcatgccaat gcccttttcg
1621actacgcggt gacaggagac gtgaagatgc tgctggccgt ccagcgccat ctcactgctg
1681tgcaggatga gaatggggac agtgtcttac acttagcaat catccacctt cattctcaac
1741ttgtgaggga tctactagaa gtcacatctg gtttgatttc tgatgacatt atcaacatga
1801gaaatgatct gtaccagacg cccttgcact tggcagtgat cactaagcag gaagatgtgg
1861tggaggattt gctgagggct ggggccgacc tgagccttct ggaccgcttg ggtaactctg
1921ttttgcacct agctgccaaa gaaggacatg ataaagttct cagtatctta ctcaagcaca
1981aaaaggcagc actacttctt gaccacccca acggggacgg tctgaatgcc attcatctag
2041ccatgatgag caatagcctg ccatgtttgc tgctgctggt ggccgctggg gctgacgtca
2101atgctcagga gcagaagtcc gggcgcacag cactgcacct ggctgtggag cacgacaaca
2161tctcattggc aggctgcctg ctcctggaag gtgatgccca tgtggacagt actacctacg
2221atggaaccac acccctgcat atagcagctg ggagagggtc caccaggctg gcagctcttc
2281tcaaagcagc aggagcagat cccctggtgg agaactttga gcctctctat gacctggatg
2341actcttggga aaatgcagga gaggatgaag gagttgtgcc tggaaccacg cctctagata
2401tggccaccag ctggcaggta tttgacatat taaatgggaa accatatgag ccagagttta
2461catctgatGT TTTTCTTGGA CTTGCCGAAA GAGCCTTAAC AGGCTGGAAG GTGAACTCTC
2521CACTCCAACT GTAACAGTGA AACTGCAACG TCTTCTTTGG TAGTTGGATG ATGTTCTTGG
2581ATTTAACGCG AAAGAATCAC ACGAAAGGAA CAAAATGAGA CGGGAAGTCC AACATCATTC
2641TCTTTTACGA AAAGCATAGA AACATGTGCC TCTATAGTGT AAAATACCCT TCACCCAAAC
2701GAAAATCTTC CAGGAAAATT GTTTATTTCT CACCGGGCTA TTCATGGACC ACACAATAAA
2761CAGGATGAAA GACACGCAAC GGTAAAATAA TTGGCCTGGA GATCCAGAGT GGGTTCCTGG
2821GGTACCGATG TTACATTGCC AACAGTTTTT ATAATGTAGG TGTAATTCGA CCCTATCCCT
2881AACTGTTGTT TGCACATGGA AGAGTCACCG ATGTTAGGTC ACCCGTGGGT GGGTTAGGCG
2941GCCAACAACC TTATTATTAC AAACATTGTG AAAAAATGAG GGGTCTTCAT TAATAATTTG
3001GTCCTTCCAG CTATGTGGGG ACGCGGATGA AAGCCATTGG GTGAAGTTAT TCCCTTGAA

Download FASTA (ORF) (Full)