Construct: ORF ccsbBroad304_06884

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004705.1_s304c1, BRDN0000409075
Derived from:
ccsbBroadEn_06884
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPL23A (6147)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06884
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6147 RPL23A ribosomal protein L23a NM_000984.6 99.7% 100% 462G>A
2 human 56969 RPL23AP32 ribosomal protein L23a pseu... NR_002229.2 67.6% (many diffs)
3 human 285830 HLA-F-AS1 HLA-F antisense RNA 1 NR_026973.1 60.8% (many diffs)
4 human 649946 RPL23AP64 ribosomal protein L23a pseu... NR_003040.2 58.6% (many diffs)
5 human 118433 RPL23AP7 ribosomal protein L23a pseu... NR_000029.3 34.4% (many diffs)
6 human 118433 RPL23AP7 ribosomal protein L23a pseu... NR_024529.1 30.5% (many diffs)
7 human 284942 RPL23AP82 ribosomal protein L23a pseu... NR_026982.1 29.2% (many diffs)
8 human 118433 RPL23AP7 ribosomal protein L23a pseu... NR_024528.1 28.6% (many diffs)
9 human 284942 RPL23AP82 ribosomal protein L23a pseu... NR_026981.1 27.8% (many diffs)
10 human 285830 HLA-F-AS1 HLA-F antisense RNA 1 NR_026972.1 22.1% (many diffs)
11 human 388574 RPL23AP87 ribosomal protein L23a pseu... NR_029406.1 18.7% (many diffs)
12 human 644128 RPL23AP53 ribosomal protein L23a pseu... NR_003572.2 7.1% (many diffs)
13 mouse 268449 Rpl23a ribosomal protein L23A NM_207523.2 89.5% 100% (many diffs)
14 mouse 108168233 LOC108168233 60S ribosomal protein L23a ... XR_001781614.1 73.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
534
ORF length:
468
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gccgaaagcg aagaaggaag ctcctgcccc tcctaaagct gaagccaaag
121cgaaggcttt aaaggccaag aaggcagtgt tgaaaggtgt ccacagccac aaaaagaaga
181agatccgcac gtcacccacc ttccggcggc cgaagacact gcgactccgg agacagccca
241aatatcctcg gaagagcgct cccaggagaa acaagcttga ccactatgct atcatcaagt
301ttccgctgac cactgagtct gccatgaaga agatagaaga caacaacaca cttgtgttca
361ttgtggatgt taaagccaac aagcaccaga ttaaacaggc tgtgaagaag ctgtatgaca
421ttgatgtggc caaggtcaac accctgattc ggcctgatgg agagaagaag gcatatgttc
481gactggctcc tgattacgat gctttggatg ttgccaacaa aattggaatc atctacccaa
541ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
601cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)