Construct: ORF ccsbBroad304_07162
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014112.1_s304c1, BRDN0000411739
- Derived from:
- ccsbBroadEn_07162
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF221 (7638)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07162
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7638 | ZNF221 | zinc finger protein 221 | NM_001297588.1 | 99.7% | 99.3% | (many diffs) |
| 2 | human | 7638 | ZNF221 | zinc finger protein 221 | NM_001297589.1 | 99.7% | 99.3% | (many diffs) |
| 3 | human | 7638 | ZNF221 | zinc finger protein 221 | NM_013359.2 | 99.7% | 99.3% | (many diffs) |
| 4 | human | 7638 | ZNF221 | zinc finger protein 221 | XM_017027232.2 | 99.7% | 99.3% | (many diffs) |
| 5 | human | 7638 | ZNF221 | zinc finger protein 221 | XM_017027233.1 | 90.3% | 89.9% | (many diffs) |
| 6 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527278.3 | 75.1% | 65.3% | (many diffs) |
| 7 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527279.3 | 75.1% | 65.3% | (many diffs) |
| 8 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_017027248.2 | 75.1% | 65.3% | (many diffs) |
| 9 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_024451694.1 | 75.1% | 65.3% | (many diffs) |
| 10 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260488.1 | 75.1% | 65.1% | (many diffs) |
| 11 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_198089.3 | 74.6% | 65.3% | (many diffs) |
| 12 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_005259215.4 | 74.6% | 65.3% | (many diffs) |
| 13 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260486.1 | 74.6% | 65.1% | (many diffs) |
| 14 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260487.1 | 74.6% | 65.1% | (many diffs) |
| 15 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_003445.3 | 74.6% | 65.1% | (many diffs) |
| 16 | human | 7767 | ZNF224 | zinc finger protein 224 | NM_001321645.2 | 71.6% | 63.5% | (many diffs) |
| 17 | human | 7767 | ZNF224 | zinc finger protein 224 | NM_013398.4 | 71.6% | 63.5% | (many diffs) |
| 18 | human | 7767 | ZNF224 | zinc finger protein 224 | XM_017027261.2 | 71.6% | 63.5% | (many diffs) |
| 19 | human | 7768 | ZNF225 | zinc finger protein 225 | NM_001321685.2 | 70.6% | 59% | (many diffs) |
| 20 | human | 7768 | ZNF225 | zinc finger protein 225 | NM_013362.4 | 70.6% | 59% | (many diffs) |
| 21 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_011527285.2 | 70.6% | 59% | (many diffs) |
| 22 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_011527286.2 | 70.6% | 59% | (many diffs) |
| 23 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_005259223.3 | 60.5% | 49.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1920
- ORF length:
- 1851
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gatttcacct tcacttgaac tgcttcattc aggactctgc aaattccctg 121 aagtagaagg aaaaatgacc acattcaaag aggcagtgac attcaaggat gtggctgtgg 181 tcttcactga ggaggagctg gggctgctgg accctgccca gaggaagctg taccgagatg 241 tgatgctaga gaacttcagg aacctgctct cagtagggaa tcaaccattc caccaagata 301 ctttccactt cttagggaag gaaaagtttt ggaagatgaa gacaacaagc caaagagaag 361 ggaattcagg aggcaagatc caaattgaga tggagactgt tccagaagca ggaccacatg 421 aagagtggtc ctgtcagcaa atatgggaac aaattgcaag tgacctaacc aggtctcaaa 481 actccataag gaacagctct cagttcttca aagaaggtga tgtcccctgc cagattgagg 541 caagactatc tataagtcac gtgcaacaga aaccttaccg ttgtaatgaa tgtaaacagt 601 ccatcagtga tgtttctgtc tttgatcttc atcaacaatc acactcagga gagaaatctc 661 atacatgtgg tgagtgtgga aaaagcttct gttacagccc agcccttcat attcatcaga 721 gagtccatat gggagaaaaa tgctataagt gtgatgtgtg tggtaaggaa tttaatcaga 781 gctcacatct gcaaactcat cagagagtcc atactggaga gaaaccattc aaacgtgggc 841 aatgtgggaa aggcttccat agtagatcag cacttaatgt tcattgcaaa ttgcacacag 901 gagagaaacc ttataattgt gaggaatgtg ggaaagcctt cattcatgat tcacagcttc 961 aggaacatca gagaatccat actggggaga agccattcaa atgtgatata tgtggtaaga 1021 gcttccgtgt tagatcaaga cttaataggc attccatggt tcacacagga gaaaaaccat 1081 tcagatgtga tacatgtggc aagaactttc gtcagagatc agcacttaat agtcattcca 1141 tggtccacat agaagagaag ccatacaaat gtgagcaatg tggaaaaggc ttcatttgta 1201 ggcgagattt ttgtaagcat cagatggtcc acacaggaga gaaaccatat aattgtaaag 1261 aatgtgggaa gaccttcaga tggtcctcat gtcttttgaa ccatcagcaa gtccacagtg 1321 gacaaaaatc cttcaaatgt gaagaatgtg ggaagggatt ttatacaaat tcacgacgat 1381 cttcccatca gagatcccac aatggagaaa agccatataa ctgtgaggag tgtggtaagg 1441 actataaaag gaggttggat cttgagtttc accagagggt ccacacgggt gagagaccct 1501 ataattgtaa ggaatgtggc aagagctttg gctgggcctc ctgtcttttg aaacatcaga 1561 gactccacag tggggaaaaa cctttcaaat gtgaagagtg tggaaagaga tttactcaga 1621 gtacacaact tcattcccat cagacatgcc atactggaga aaagctatac aaatgtgagc 1681 agtgtgagaa ggggtacaac agtaaattta atcttgacat gcaccagagg gtccacaggg 1741 gagagcgacc ctataattgt aaggaatgtg gaaagagctt tggctgggct tcatgtcttt 1801 tgaaacatca gagactccac agtggagaaa agccattgaa atctggagtg tgggaagaga 1861 tctactcaga attcacagct tcatttacat cagtaagtct atgtgggaga aaagccatat 1921 tgccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg 1981 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct 2041 ggatta