Transcript: Human XM_011527279.3

PREDICTED: Homo sapiens zinc finger protein 155 (ZNF155), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF155 (7711)
Length:
3722
CDS:
1221..2870

Additional Resources:

NCBI RefSeq record:
XM_011527279.3
NBCI Gene record:
ZNF155 (7711)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011527279.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417838 AGGGCTATGTTACTAAGTTTA pLKO_005 2557 CDS 100% 13.200 18.480 N ZNF155 n/a
2 TRCN0000012967 GAAGCAGGACTACCCACAATT pLKO.1 1656 CDS 100% 13.200 18.480 N ZNF155 n/a
3 TRCN0000436589 GTCTCAGGACTCTATCATAAA pLKO_005 1592 CDS 100% 13.200 9.240 N ZNF155 n/a
4 TRCN0000418325 TAGTGATCCAATCAGTGTAAT pLKO_005 2924 3UTR 100% 13.200 9.240 N ZNF155 n/a
5 TRCN0000012963 GCCAAGCTGAATAGCCCTTAT pLKO.1 3483 3UTR 100% 10.800 7.560 N ZNF155 n/a
6 TRCN0000433696 TGGCAAGGAATTTAGTCAAAG pLKO_005 1880 CDS 100% 10.800 7.560 N ZNF155 n/a
7 TRCN0000012965 GCTTTATTGGTAGGCTAGATT pLKO.1 2308 CDS 100% 5.625 3.938 N ZNF155 n/a
8 TRCN0000012964 GCACTTAATGTTCATCGTAAA pLKO.1 1989 CDS 100% 10.800 6.480 N ZNF155 n/a
9 TRCN0000012966 CGGGAGAGAGACCTTATAATT pLKO.1 2605 CDS 100% 15.000 7.500 Y ZNF155 n/a
10 TRCN0000416528 TCAGAGTTCACAACTTCATTC pLKO_005 45 5UTR 100% 10.800 5.400 Y ZNF221 n/a
11 TRCN0000015270 AGTAAGTCTATGTGGGAGAAA pLKO.1 321 5UTR 100% 4.950 2.475 Y ZNF221 n/a
12 TRCN0000015268 CCATTCAAATATGAGAACTGT pLKO.1 427 5UTR 100% 3.000 1.500 Y ZNF221 n/a
13 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 730 5UTR 100% 5.625 2.813 Y KLHL30 n/a
14 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 730 5UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011527279.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07167 pDONR223 100% 97.6% 96.7% None (many diffs) n/a
2 ccsbBroad304_07167 pLX_304 0% 97.6% 96.7% V5 (many diffs) n/a
3 TRCN0000472100 CATTCGAGTACGACGCCCGCGCAT pLX_317 28.8% 97.6% 96.7% V5 (many diffs) n/a
4 ccsbBroadEn_07176 pDONR223 100% 76.6% 68.6% None (many diffs) n/a
5 ccsbBroad304_07176 pLX_304 0% 76.6% 68.6% V5 (many diffs) n/a
6 TRCN0000481658 CTCCTGAACCAAGTGGAAAACCTC pLX_317 1.5% 76.6% 68.6% V5 (many diffs) n/a
7 ccsbBroadEn_01823 pDONR223 100% 76.4% 68.3% None (many diffs) n/a
8 ccsbBroad304_01823 pLX_304 0% 76.4% 68.3% V5 (many diffs) n/a
9 TRCN0000476788 CTGCGAAGACGGCAACATCAGATA pLX_317 29.8% 76.4% 68.3% V5 (many diffs) n/a
10 ccsbBroadEn_07162 pDONR223 100% 75.1% 65.3% None (many diffs) n/a
11 ccsbBroad304_07162 pLX_304 0% 75.1% 65.3% V5 (many diffs) n/a
12 TRCN0000474103 CGTATCCGGTAAACAACTGTACCC pLX_317 13.6% 75.1% 65.3% V5 (many diffs) n/a
13 ccsbBroadEn_01821 pDONR223 100% 64.7% 57% None (many diffs) n/a
14 ccsbBroad304_01821 pLX_304 0% 64.7% 57% V5 (many diffs) n/a
15 TRCN0000468268 AGACCACTGATCAAGATCTATTTA pLX_317 18.1% 64.7% 57% V5 (many diffs) n/a
16 ccsbBroadEn_07177 pDONR223 100% 63.2% 55.7% None (many diffs) n/a
17 ccsbBroad304_07177 pLX_304 0% 63.2% 55.7% V5 (many diffs) n/a
18 TRCN0000469087 TAGTTGACACCGCGGTGTCCATGT pLX_317 21.4% 63.2% 55.7% V5 (many diffs) n/a
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