Construct: ORF ccsbBroad304_07177
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016136.1_s304c1, BRDN0000400859
- Derived from:
- ccsbBroadEn_07177
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF224 (7767)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07177
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7767 | ZNF224 | zinc finger protein 224 | NM_001321645.2 | 99.8% | 99.7% | (many diffs) |
| 2 | human | 7767 | ZNF224 | zinc finger protein 224 | NM_013398.4 | 99.8% | 99.7% | (many diffs) |
| 3 | human | 7767 | ZNF224 | zinc finger protein 224 | XM_017027261.2 | 99.8% | 99.7% | (many diffs) |
| 4 | human | 7768 | ZNF225 | zinc finger protein 225 | NM_001321685.2 | 79.1% | 71.2% | (many diffs) |
| 5 | human | 7768 | ZNF225 | zinc finger protein 225 | NM_013362.4 | 79.1% | 71.2% | (many diffs) |
| 6 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_011527285.2 | 79.1% | 71.2% | (many diffs) |
| 7 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_011527286.2 | 79.1% | 71.2% | (many diffs) |
| 8 | human | 7638 | ZNF221 | zinc finger protein 221 | NM_001297588.1 | 71.8% | 63.9% | (many diffs) |
| 9 | human | 7638 | ZNF221 | zinc finger protein 221 | NM_001297589.1 | 71.8% | 63.9% | (many diffs) |
| 10 | human | 7638 | ZNF221 | zinc finger protein 221 | NM_013359.2 | 71.8% | 63.9% | (many diffs) |
| 11 | human | 7638 | ZNF221 | zinc finger protein 221 | XM_017027232.2 | 71.8% | 63.9% | (many diffs) |
| 12 | human | 7638 | ZNF221 | zinc finger protein 221 | XM_017027233.1 | 69.4% | 61.1% | (many diffs) |
| 13 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_005259223.3 | 68.7% | 61.6% | (many diffs) |
| 14 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260486.1 | 64.2% | 57.4% | (many diffs) |
| 15 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260487.1 | 64.2% | 57.4% | (many diffs) |
| 16 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_003445.3 | 64.2% | 57.4% | (many diffs) |
| 17 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_198089.3 | 64.2% | 57.2% | (many diffs) |
| 18 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_005259215.4 | 64.2% | 57.2% | (many diffs) |
| 19 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260488.1 | 63.2% | 55.8% | (many diffs) |
| 20 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527278.3 | 63.2% | 55.7% | (many diffs) |
| 21 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527279.3 | 63.2% | 55.7% | (many diffs) |
| 22 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_017027248.2 | 63.2% | 55.7% | (many diffs) |
| 23 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_024451694.1 | 63.2% | 55.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2187
- ORF length:
- 2121
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgac cacgttcaag gaggcaatga ccttcaagga cgtggctgtg gtcttcactg 121 aggaagagct ggggctgctg gaccttgctc agaggaagct gtatcgagat gtgatgctgg 181 agaacttcag gaacctgctc tcagtgggac atcaagcatt ccacagggat actttccact 241 tcctaaggga agaaaagatt tggatgatga agacagcaat ccaaagggaa gggaattcag 301 gagacaagat ccaaactgag atggagactg tttcagaagc aggaacacat caagagtggt 361 ccttccagca aatctgggaa aaaattgcaa gtgatttaac caggtctcaa gacttggtga 421 taaatagctc tcagttctcc aaagaaggtg atttcccctg ccagactgag gcaggactat 481 ctgtaattca cacaagacag aaatcttccc agggcaatgg atataaacca tccttcagtg 541 atgtctccct ctttgatttt catcaacaat tacactcagg agagaaatct catacgtgtg 601 atgagtgtgg aaagaacttt tgttacatct cagcccttcg tattcatcag agagtccaca 661 tgggagagaa atgctataag tgtgacgtgt gtggtaagga attcagtcag agttcacatc 721 tgcaaactca tcagagagtc cacactggag agaaaccgtt caaatgtgtg gaatgtggga 781 aaggcttcag tcgtagatca gcacttaatg ttcatcacaa attacacaca ggagagaaac 841 cttataattg tgaggaatgc gggaaggcct tcattcacga ttcccagctt caagaacatc 901 agagaatcca tacgggggag aagccattca aatgtgatat atgtggtaag agcttctgtg 961 gtagatcaag acttaatagg cattccatgg ttcacacggc agagaaacca ttccgatgtg 1021 atacgtgtga taagagcttt cgtcagagat cagcacttaa tagtcatcgc atgatccaca 1081 caggagagaa accatacaaa tgtgaggagt gtggaaaagg ctttatttgt aggcgagatc 1141 tttatacgca tcatatggtc cacacgggag aaaagccata taattgtaaa gagtgtggga 1201 agagcttcag atgggcctcg tgtcttttga aacatcagcg agtccacagt ggagaaaaac 1261 cattcaaatg tgaagaatgt gggaaaggat tttacacaaa ttcacaatgc tattcccacc 1321 agagatccca tagtggagaa aaaccataca aatgtgtgga gtgtgggaag ggctacaaaa 1381 ggaggttgga tcttgacttt caccagcgcg tccatacagg agagaaactg tataattgta 1441 aggaatgtgg gaagagcttt agtcgggccc catgtctttt gaaacatgag agactccaca 1501 gtggagaaaa accattccaa tgtgaagagt gtgggaagag atttactcaa aattcacatc 1561 ttcattccca tcagagagtt cacactggag aaaagccata caaatgtgag aagtgtggaa 1621 agggctacaa tagtaagttt aatcttgata tgcaccagaa ggtccacaca ggagagagac 1681 catacaattg taaggaatgt gggaagagct ttggctgggc ctcgtgtctt ttgaaacatc 1741 agagactgca cagtggagaa aaaccattca aatgtgaaga gtgtgggaaa agatttactc 1801 agaattcaca gcttcattct catcaaagag tgcacactgg agaaaagcca tacaaatgtg 1861 atgagtgtgg gaagggcttc agctggtcct caactcgtct gacccatcag agacgccaca 1921 gcagagaaac acctctcaaa tgtgagcagc atgggaagaa cattgtacag aattcattct 1981 ctaaagtgca agaaaaagtt cacagtgtag aaaagccata caaatgtgag gactgtggga 2041 agggctacaa caggcgcttg aatcttgata tgcatcagag ggtccacatg ggagagaaaa 2101 catggaagtg tagggagtgt gatatgtgct ttagtcaggc ctcaagcctt cgacttcatc 2161 agaatgttca tgttggagaa aaaccttacc caactttctt gtacaaagtg gttggtaagc 2221 ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt 2281 ggcgcgttaa gtcgacaatc aacctctgga tta