Construct: ORF ccsbBroad304_07246

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017026.1_s304c1, BRDN0000462252
Derived from:
ccsbBroadEn_07246
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPFIBP1 (8496)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07246
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8496 PPFIBP1 PPFIA binding protein 1 NM_177444.3 99.9% 99.9% 252A>G;442G>T
2 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020062.2 99.6% 99.6% 252A>G;442G>T;1040_1048delAAGGTAAAA
3 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020065.2 98.9% 98.9% 252A>G;442G>T;1430_1431ins30
4 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020061.2 98.8% 98.8% 252A>G;442G>T;905_937del
5 human 8496 PPFIBP1 PPFIA binding protein 1 XM_024449236.1 98.8% 98.8% 252A>G;442G>T;1631_1663del
6 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020063.2 98.6% 98.6% (many diffs)
7 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020059.2 98.5% 98.5% (many diffs)
8 human 8496 PPFIBP1 PPFIA binding protein 1 XM_024449235.1 98.5% 98.5% (many diffs)
9 human 8496 PPFIBP1 PPFIA binding protein 1 XM_024449233.1 97.8% 97.7% (many diffs)
10 human 8496 PPFIBP1 PPFIA binding protein 1 XM_024449237.1 97.5% 97.5% (many diffs)
11 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020056.2 97.5% 97.4% (many diffs)
12 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020057.2 97.5% 97.4% (many diffs)
13 human 8496 PPFIBP1 PPFIA binding protein 1 XM_024449232.1 97.5% 97.4% (many diffs)
14 human 8496 PPFIBP1 PPFIA binding protein 1 NM_001198916.2 96.8% 96.8% 252A>G;442G>T;696_697ins93
15 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020058.2 96.8% 96.8% (many diffs)
16 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020072.2 96.5% 96.5% (many diffs)
17 human 8496 PPFIBP1 PPFIA binding protein 1 XM_024449234.1 96.5% 96.5% (many diffs)
18 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020069.2 95.8% 95.7% (many diffs)
19 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020070.2 95.8% 95.7% (many diffs)
20 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020067.2 95.5% 95.5% (many diffs)
21 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020068.2 95.5% 95.5% (many diffs)
22 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020073.2 94.8% 94.8% (many diffs)
23 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020064.2 94.8% 94.7% (many diffs)
24 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020071.2 94.5% 94.5% (many diffs)
25 human 8496 PPFIBP1 PPFIA binding protein 1 NM_003622.4 94.5% 94.4% (many diffs)
26 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020066.2 93.5% 93.5% (many diffs)
27 human 8496 PPFIBP1 PPFIA binding protein 1 NM_001198915.2 84.8% 84.8% 0_1ins459
28 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020074.2 84.6% 84.6% 0_1ins459;581_589delAAGGTAAAA
29 human 8496 PPFIBP1 PPFIA binding protein 1 XM_006719159.4 82.8% 82.8% (many diffs)
30 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020075.2 80.6% 80.6% (many diffs)
31 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020076.2 65.6% 65.6% 0_1ins1014;26_34delAAGGTAAAA;626_658del
32 human 8496 PPFIBP1 PPFIA binding protein 1 XM_024449238.1 54.5% 53.5% (many diffs)
33 human 8496 PPFIBP1 PPFIA binding protein 1 XM_017020078.1 51.5% 50.5% (many diffs)
34 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_006507101.2 86.4% 90.1% (many diffs)
35 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_006507097.2 85.6% 89.1% (many diffs)
36 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_006507098.3 85.5% 89.1% (many diffs)
37 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_006507099.2 84.9% 88.4% (many diffs)
38 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_011241627.1 84.8% 88.4% (many diffs)
39 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_006507095.3 84.7% 88.2% (many diffs)
40 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_011241624.1 84.7% 88.2% (many diffs)
41 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_011241625.1 84.7% 88.2% (many diffs)
42 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_011241626.2 84.7% 88.2% (many diffs)
43 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_006507096.2 84% 87.5% (many diffs)
44 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_011241629.1 83.5% 87.1% (many diffs)
45 mouse 67533 Ppfibp1 PTPRF interacting protein, ... NM_026221.2 82.9% 86.4% (many diffs)
46 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_017321719.1 82.9% 86.4% (many diffs)
47 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_006507103.2 82.7% 86.2% (many diffs)
48 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_011241628.1 82% 85.5% (many diffs)
49 mouse 67533 Ppfibp1 PTPRF interacting protein, ... NM_001170433.1 82% 85.5% (many diffs)
50 mouse 67533 Ppfibp1 PTPRF interacting protein, ... XM_006507102.2 81.8% 85.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3102
ORF length:
3033
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gatgagtgat gcaagtgaca tgttggctgc agcgttggag cagatggatg
121gtatcatagc aggttctaag gctctggaat attccaatgg gatttttgat tgccaatctc
181ccacctctcc attcatggga agtttgcgag ctctgcacct tgtggaagac ctgcgtggat
241tgttagagat gatggaaaca gatgagaaag aaggcttgag atgccagatc ccagattcaa
301cagcagaaac gcttgttgag tggcttcaga gtcaaatgac aaatggacac ctaccaggga
361acggagatgt gtatcaagaa aggctggcac gtttagaaaa tgataaagaa tccctcgttc
421ttcaggtaag tgtgttaaca gaccaggtgg aggctcaggg agagaagatt cgagatttgg
481agttttgtct tgaagagcac agagagaagt tgaatgccac agaagaaatg ctgcagcagg
541agcttctaag taggacatcc ttagaaactc agaagttgga tctgatggct gaaatatcta
601acttgaagtt gaaactgaca gctgtagaga aggacagatt ggattatgaa gataagttca
661gagacacaga ggggctgatt caggagatca atgatttgag gttaaaagtt agtgaaatgg
721acagtgagag acttcagtat gaaaaaaagc ttaaatcaac caaatcttta atggccaaac
781tttctagcat gaaaatcaag gtgggtcaga tgcagtatga aaagcagcgg atggaacaaa
841aatgggagtc actgaaggat gaactggcat ctttaaaaga acaactagaa gaaaaggaat
901ctgaagtaaa aaggctacaa gaaaaattgg tttgcaagat gaaaggagaa ggggttgaaa
961ttgttgatag agacatcgaa gtacaaaaaa tgaaaaaagc tgtggagtcc ttgatggcag
1021caaatgaaga aaaggatcgg aaaatagaag atcttcgaca gtgcctgaac aggtacaaga
1081aaatgcaaga cacggtggta ctggcccaag gcaaagatgg agaatatgaa gagctgctca
1141attccagttc catctcctct ttgctggatg cacagggttt cagtgatctg gagaaaagtc
1201catcacccac tccagtaatg ggatctccca gttgtgaccc atttaacaca agtgttcccg
1261aagagttcca tactaccatc ttgcaagttt ccatcccttc attattgcca gcaactgtaa
1321gcatggaaac ttctgaaaaa tcaaagttga ctcctaagcc agagacttca tttgaagaaa
1381atgatggaaa cataatcctt ggtgccactg ttgataccca actgtgtgat aaacttttaa
1441cttcaagtct gcagaagtcc agcagcctgg gcaatctgaa gaaagagaca tctgatgggg
1501aaaaggaaac tattcagaag acttcagagg acagagctcc ggcagaaagc aggccatttg
1561ggacccttcc tcccaggccc ccagggcagg acacctccat ggatgacaac cccttcggca
1621ctcgaaaagt cagatcttcc tttggccggg gcttttttaa aatcaaaagt aacaagagaa
1681cagcaagtgc accaaactta gctgaaacag aaaaagagac agcagagcac ctagatctgg
1741ctggtgcttc ttctcggcca aaagattcac agaggaacag tcccttccag ataccgcctc
1801catctccaga ttccaaaaag aaatccagag gtatcatgaa actctttgga aaacttagga
1861gaagtcaatc aactacattc aacccagatg acatgtctga gcctgaattc aaaagaggag
1921ggacaagggc aaccgcgggg ccccgattag gttggtctcg agacttggga cagtctaaca
1981gtgacttgga tatgccattt gccaagtgga ccaaggagca ggtttgcaat tggctgatgg
2041aacagggctt gggctcgtac ctgaattctg gcaagcactg gattgcatct ggccaaacgc
2101ttttgcaggc ttctcaacaa gatctagaga aggaacttgg aatcaagcat tcacttcatc
2161gaaagaaact ccagctagca ctccaagccc tgggatctga agaagaaacc aatcatggga
2221agctggattt caactgggtc actagatggt tggatgacat tggcctccct caatataaga
2281cccagtttga tgaaggacgg gttgatggtc gaatgctaca ttacatgact gttgatgact
2341tactgtctct gaaggttgta agtgtgctac accatctcag tatcaaaagg gccatccagg
2401tcctgaggat caataacttt gaaccaaact gtctacggag gcggccatct gatgagaata
2461ccatcgcccc atcagaagtt cagaagtgga ctaaccatcg agtgatggag tggctgcgct
2521ccgtggactt ggcagaatat gcgcccaatc tcagaggcag tggtgtccat ggtgggctca
2581tggttctaga gcctcgtttt aacgtagaaa caatggctca gttattgaac atcccaccca
2641ataagacttt gctgcgaaga catttggcca ctcatttcaa ccttctgatt ggggctgagg
2701cacagcacca gaagcgagat gccatggagc tgccggatta tgtacttcta acagctactg
2761ccaaagtgaa gccaaagaaa cttgccttta gcaattttgg gaatttgaga aagaagaaac
2821aggaagatgg tgaagaatat gtttgtccaa tggaattggg acaggcatca ggaagtgcat
2881ctaagaaagg atttaaacct ggtttggata tgcgcctgta tgaggaagat gatttggacc
2941ggttagagca gatggaagat tcagaaggga cagtgagaca gataggtgca ttctctgaag
3001gcatcaacaa tctgacgcac atgttaaaag aagatgacat gtttaaagat tttgctgccc
3061gttcccccag tgccagcatt acagatgaag actcaaacgt tttgccaact ttcttgtaca
3121aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
3181ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)