Construct: ORF ccsbBroad304_07248

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005002.1_s304c1, BRDN0000403763
Derived from:
ccsbBroadEn_07248
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPFIA1 (8500)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07248
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8500 PPFIA1 PTPRF interacting protein a... NM_003626.4 99.8% 99.7% (many diffs)
2 human 8500 PPFIA1 PTPRF interacting protein a... XM_017018449.1 98.9% 98.9% (many diffs)
3 human 8500 PPFIA1 PTPRF interacting protein a... NM_177423.2 98.3% 98.2% (many diffs)
4 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545317.2 97.7% 97.7% (many diffs)
5 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545319.1 97.2% 97.2% (many diffs)
6 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545316.2 96.9% 96.9% (many diffs)
7 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545315.2 96.5% 96.5% (many diffs)
8 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545314.3 95.4% 95.3% (many diffs)
9 human 8500 PPFIA1 PTPRF interacting protein a... XM_017018448.1 94.7% 94.7% (many diffs)
10 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545313.2 94.6% 94.6% (many diffs)
11 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545312.2 94% 93.9% (many diffs)
12 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545311.3 93.9% 93.8% (many diffs)
13 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545310.3 93.6% 93.5% (many diffs)
14 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545308.3 92.5% 92.5% (many diffs)
15 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545307.3 92.4% 92.4% (many diffs)
16 human 8500 PPFIA1 PTPRF interacting protein a... XM_006718716.3 91.8% 91.8% (many diffs)
17 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545306.3 91.8% 91.8% (many diffs)
18 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545309.2 90.8% 90.4% (many diffs)
19 human 8500 PPFIA1 PTPRF interacting protein a... XM_017018450.1 78.8% 73.8% (many diffs)
20 human 8500 PPFIA1 PTPRF interacting protein a... NR_045286.2 57.8% (many diffs)
21 human 8500 PPFIA1 PTPRF interacting protein a... XM_011545318.3 46% 46% (many diffs)
22 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508610.2 85.7% 95.5% (many diffs)
23 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508611.2 84.8% 94.2% (many diffs)
24 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508609.3 83.9% 93.6% (many diffs)
25 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_017322223.1 83.9% 93.5% (many diffs)
26 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_017322222.1 83.7% 93.2% (many diffs)
27 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508612.2 83.6% 93.1% (many diffs)
28 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508608.3 83.3% 92.8% (many diffs)
29 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508607.3 83.2% 92.8% (many diffs)
30 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_017322224.1 83.1% 92.3% (many diffs)
31 mouse 233977 Ppfia1 protein tyrosine phosphatas... NM_001033319.2 83% 92.5% (many diffs)
32 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508605.3 82.7% 92.2% (many diffs)
33 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508603.3 82.6% 92.1% (many diffs)
34 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_017322220.1 82% 91.4% (many diffs)
35 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508601.3 81.9% 91.3% (many diffs)
36 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_011241995.2 81.6% 90.9% (many diffs)
37 mouse 233977 Ppfia1 protein tyrosine phosphatas... NM_001195086.1 81.3% 90.6% (many diffs)
38 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508599.3 81.3% 90.6% (many diffs)
39 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508598.3 81.3% 90.6% (many diffs)
40 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_006508604.3 81.1% 90% (many diffs)
41 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_011241991.2 80.6% 89.9% (many diffs)
42 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_017322221.1 80.4% 89.3% (many diffs)
43 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_011241996.2 80% 89.2% (many diffs)
44 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_011241992.2 79.2% 87.9% (many diffs)
45 mouse 233977 Ppfia1 protein tyrosine phosphatas... XM_011241997.2 39.6% 43.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3672
ORF length:
3606
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61taggcatgat gtgcgaggtg atgccgacca tcagcgaagc agaaggcccc cctggaggag
121gtggaggcca tggttccggc tccccttcac agccagatgc agattcacat tttgaacagt
181tgatggtctc catgctagaa gaaagggacc gccttcttga tacactgaga gagactcaag
241aaacgctggc cttaacccag gggaagttac acgaggttgg tcatgaaaga gattccttgc
301agagacagct caacacagca cttccacagg agttcgcagc acttactaaa gaactcaatg
361tatgcaggga acagctcctt gaaagggaag aagaaattgc tgaactgaaa gcagaaagga
421ataacaccag gctgctgtta gagcatttgg aatgccttgt ctccaggcat gagcggtctc
481ttaggatgac cgtggtgaag agacaagcgc agtctccagc aggcgtgtcc agcgaagtgg
541aagtgctgaa agcactgaag tccttatttg aacaccacaa agctctggat gaaaaggtga
601gagagcgatt acgagtagca cttgaaagat gtagtttgtt agaagaggaa ttaggtgcca
661cacacaaaga gctaatgatt cttaaagaac agaataatca gaaaaaaact ctaacagatg
721gagtgctgga cataaaccat gaacaagaaa atacaccaag cacgagtgga aagagatctt
781ctgatggttc tttaagccac gaggaagacc ttgctaaagt aattgagctc caagaaatca
841taagtaagca gtcaagggaa cagagccaaa tgaaagaacg cctggcttcc ctttccagtc
901atgtgacaga actggaagag gatctggaca cggctagaaa agatctcatc aaatctgaag
961aaatgaacac aaaattgcaa cgagatgtcc gtgaagccat ggcccaaaag gaagatatgg
1021aagagagaat cactactctt gaaaaacgct acctcgctgc acagcgtgaa gccacatctg
1081tgcatgacct caatgataaa cttgaaaatg aaattgcaaa taaagattct atgcatcgac
1141agactgaaga taaaaaccgc cagttacagg agcgcttgga attggcagag caaaagctgc
1201aacagacact gaggaaggca gagacgctcc cggaggtgga ggcggagctg gcccagaggg
1261tggcagcgct ttccaaggct gaagagagac acggcaacat tgaagaaagg ttacgacaga
1321tggaagcaca gttggaggag aagaatcaag aactgcagcg ggcaaggcaa agagaaaaaa
1381tgaacgaaga acataataaa cgtttatcag acactgttga caagctgctt tcagaatcta
1441atgagaggct tcaacttcat cttaaagaga gaatggctgc tttggaagat aagaactctc
1501ttttaagaga agttgaaagt gcaaaaaagc agttagaagg aacacaacac gataaggatc
1561agcttgtcct aaacattgaa gcactgaggg ctgaactaga ccacatgaga ctaagaggtg
1621cttcacttca tcatggccga ccccacttgg gcagtgtccc agatttcagg ttccccatgg
1681cagatggcca cacagactcc tacagcacca gtgcagtgct gcggcgcaca cagaaaggcc
1741ggctggcagc cctgcgagat gagccttcca aggtacaaac tcttaatgag caggattggg
1801aacgtgccca gcaagctagt gtcttggcaa atgtagcaca agcattcgag agtgatgctg
1861acgtgtctga tggtgaagat gacagggaca ctctcctcag ctcagttgac ctgctatcgc
1921ccagcgggca ggccgacgcg cacacactag ccatgatgct tcaggagcag ctggacgcca
1981tcaacaaaga gatcaggttg attcaggaag aaaaagaaaa tacagagcag cgggcagagg
2041agattgaaag tcgagttggc agtggaagtc tagacaatct tggtcgtttt agatcaatga
2101gctccattcc cccctaccct gcttcctcgc ttgctagctc ctcccctccg ggcagtgggc
2161gctccacccc acgaaggatc cctcacagcc cagctcggga agtggacaga ctgggcgtca
2221tgaccctttt gccaccttcc agagaagagg tacgagatga caagacaacc ataaagtgtg
2281aaacctcccc gccttcctcc ccgagagccc ttcggttaga ccggctgcac aaaggggcgc
2341tgcacaccgt tagccacgag gacatcaggg acataaggaa ctccacaggc tcccaggatg
2401gtcccgtgag caaccccagc agtagcaaca gtagccagga ctcgctccac aaagccccaa
2461agaagaaagg cattaagtcc tccattggcc gcttgtttgg caagaaagaa aagggccgac
2521ctggacaaac tggcaaagaa gcattaggac aagctggtgt ttccgagacg gataactcat
2581ctcaggatgc cttgggactt agcaaattgg ggggacaggc tgaaaaaaat cgtaaacttc
2641aaaaaaagca tgaattgctg ggggaagccc ggagacaagg tttacctttt gcccaatggg
2701acgggccaac ggttgtggtc tggctagagc tctgggttgg gatgccagcc tggtatgtgg
2761ctgcctgccg agcaaacgtg aaaagcgggg ccatcatgtc ggccctgtcc gacacagaga
2821tccagcgtga gattggcatc agcaaccccc tgcacaggct gaagctgagg ctggccatcc
2881aggagatcat gtcgctgacc agcccgtctg ccccgcccac atctagaacg acactcgcct
2941atggggacat gaaccacgag tggatcggca acgagtggct ccccagcctg ggcctccccc
3001agtaccgcag ctacttcatg gagtgccttg tagacgccag gatgctggac cacttgacca
3061agaaagacct tcgagggcag ctgaaaatgg tcgacagttt tcacagaaac agtttccagt
3121gtggaattat gtgcctgaga aggttaaatt atgaccggaa agaactggaa agaaaaagag
3181aagaaagtca gagtgaaata aaagacgtgc ttgtttggag caatgatcga gtgattcgct
3241ggatcctgtc aattggcctt aaagaatatg caaacaatct tatagagagt ggtgttcacg
3301gagcacttct ggccttagat gaaaccttcg acttcagtgc actggcactg ctgttacaga
3361tcccaacgca gaacacacag gctcgtgctg tcttggaaag agaatttaac aaccttttgg
3421tcatggggac tgatagaagg tttgatgaag atgatgataa aagctttagg agagcacctt
3481catggagaaa aaagtttaga ccaaaggaca ttcgtggctt agctgctggg tcagcagaga
3541ctctccctgc aaacttccgg gtgacttctt ctatgtcttc cccctctatg cagccaaaga
3601agatgcagat ggacggcaat gtatcaggaa cacagaggtt ggattctgct acagtcagga
3661cttactcctg ctacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
3721tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
3781caatcaacct ctggatta

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