Construct: ORF ccsbBroad304_07531
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014094.1_s304c1, BRDN0000411397
- Derived from:
- ccsbBroadEn_07531
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TANK (10010)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07531
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10010 | TANK | TRAF family member associat... | NM_001199135.3 | 99.9% | 99.7% | 788C>T |
| 2 | human | 10010 | TANK | TRAF family member associat... | NM_004180.3 | 99.9% | 99.7% | 788C>T |
| 3 | human | 10010 | TANK | TRAF family member associat... | XM_017003096.1 | 99.9% | 99.7% | 788C>T |
| 4 | human | 10010 | TANK | TRAF family member associat... | XM_017003097.1 | 99.9% | 99.7% | 788C>T |
| 5 | human | 10010 | TANK | TRAF family member associat... | XM_017003095.1 | 94.7% | 94.6% | 1_69del;857C>T |
| 6 | human | 10010 | TANK | TRAF family member associat... | XM_005246207.3 | 94.1% | 94% | 1_78del;866C>T |
| 7 | human | 10010 | TANK | TRAF family member associat... | XM_024452335.1 | 93.5% | 93.3% | 1_87del;875C>T |
| 8 | human | 10010 | TANK | TRAF family member associat... | XM_017003094.1 | 89.9% | 89.8% | 1_141del;929C>T |
| 9 | human | 10010 | TANK | TRAF family member associat... | XM_017003093.1 | 87.9% | 87.7% | 1_174del;962C>T |
| 10 | human | 10010 | TANK | TRAF family member associat... | XM_024452333.1 | 87.9% | 87.7% | 1_174del;962C>T |
| 11 | human | 10010 | TANK | TRAF family member associat... | XM_024452337.1 | 63.9% | 63.7% | 0_1ins459;329C>T |
| 12 | human | 10010 | TANK | TRAF family member associat... | NM_133484.1 | 27.7% | 26.1% | (many diffs) |
| 13 | mouse | 21353 | Tank | TRAF family member-associat... | NM_001164072.1 | 84.7% | 79.7% | (many diffs) |
| 14 | mouse | 21353 | Tank | TRAF family member-associat... | XM_017316913.1 | 84.7% | 79.7% | (many diffs) |
| 15 | mouse | 21353 | Tank | TRAF family member-associat... | NM_001164071.1 | 84.5% | 79.5% | (many diffs) |
| 16 | mouse | 21353 | Tank | TRAF family member-associat... | XM_006499088.3 | 84.5% | 79.5% | (many diffs) |
| 17 | mouse | 21353 | Tank | TRAF family member-associat... | XM_006499087.2 | 78.5% | 73.8% | (many diffs) |
| 18 | mouse | 21353 | Tank | TRAF family member-associat... | NM_011529.2 | 78.3% | 73.6% | (many diffs) |
| 19 | mouse | 21353 | Tank | TRAF family member-associat... | XM_006499089.2 | 58.8% | 55.5% | (many diffs) |
| 20 | mouse | 21353 | Tank | TRAF family member-associat... | XM_011239415.2 | 58.8% | 55.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1341
- ORF length:
- 1275
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga taaaaacatt ggcgagcaac tcaataaagc gtatgaagcc ttccggcagg 121 catgcatgga tagagattct gcagtaaaag aattacagca aaagactgag aactatgagc 181 agagaatacg tgaacaacag gaacagctgt cacttcaaca gactattatt gacaagctaa 241 aatctcagtt acttcttgtg aattccactc aagataacaa ttatggctgt gttcctctgc 301 ttgaagacag tgaaacaaga aagaataatt tgactcttga tcagccacaa gataaagtga 361 tttcaggaat agcaagagaa aaactaccaa aggtaagaag acaagaggtt tcttctccta 421 gaaaagaaac ttcagcaagg agtcttggca gtcctttgct ccatgaaagg ggtaatatag 481 agaagacttt ctgggatctg aaagaagaat ttcataaaat atgcatgcta gcaaaagcac 541 agaaagacca cttaagcaaa cttaatatac cagacactgc aactgaaaca cagtgctctg 601 tgcctataca gtgtacggat aaaacagata aacaagaagc gctgtttaag cctcaggcta 661 aagatgatat aaatagaggt gcaccatcca tcacatctgt cacaccaaga ggactgtgca 721 gagatgagga agacacctct tttgaatcac tttctaaatt caatgtcaag tttccaccta 781 tggacaatga ctcaactttc ttacatagca ctccagagag acccggcatc cttagtcctg 841 ccacgtctga ggtagtgtgc caagagaaat ttaatatgga gttcagagac aacccaggga 901 actttgttaa aacagaagaa actttatttg aaattcaggg aattgacccc atagcttcag 961 ctatacaaaa ccttaaaaca actgacaaaa caaagccctc aaatctcgta aacacttgta 1021 tcaggacaac tctggataga gctgcgtgtt tgccacctgg agaccataat gcattatatg 1081 taaatagctt cccacttctg gacccatctg atgcaccttt tccctcactc gattccccgg 1141 gaaaagcaat ccgaggacca cagcagccca tttggaagcc ctttcctaat caagacagtg 1201 actcggtggt actaagtggc acagactcag aactgcatat acctcgagta tgtgaattct 1261 gtcaagcagt tttcccacca tccattacat ccagggggga tttccttcgg catcttaatt 1321 cacacttcaa tggagagact tacccaactt tcttgtacaa agtggttggt aagcctatcc 1381 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 1441 ttaagtcgac aatcaacctc tggatta