Construct: ORF ccsbBroad304_07672

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010416.1_s304c1, BRDN0000399859
Derived from:
ccsbBroadEn_07672
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RFPL3 (10738)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07672
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10738 RFPL3 ret finger protein like 3 NM_006604.2 99.7% 99.6% 241C>A;792A>G
2 human 10739 RFPL2 ret finger protein like 2 NM_001159545.2 97.2% 94% (many diffs)
3 human 10739 RFPL2 ret finger protein like 2 NM_001159546.2 97.2% 94% (many diffs)
4 human 10739 RFPL2 ret finger protein like 2 NM_001364984.1 97.2% 94% (many diffs)
5 human 10739 RFPL2 ret finger protein like 2 NM_001364985.1 97.2% 94% (many diffs)
6 human 5988 RFPL1 ret finger protein like 1 XM_011530298.3 95.6% 90.9% (many diffs)
7 human 5988 RFPL1 ret finger protein like 1 XM_011530299.3 95.6% 90.9% (many diffs)
8 human 5988 RFPL1 ret finger protein like 1 XM_017028900.2 95.6% 90.9% (many diffs)
9 human 5988 RFPL1 ret finger protein like 1 XM_017028902.2 95.6% 90.9% (many diffs)
10 human 10738 RFPL3 ret finger protein like 3 NM_001098535.1 90.6% 90.5% 1_87del;328C>A;879A>G
11 human 10739 RFPL2 ret finger protein like 2 NM_001364982.1 90.3% 87.4% (many diffs)
12 human 5988 RFPL1 ret finger protein like 1 NM_021026.2 86.8% 82.6% (many diffs)
13 human 10739 RFPL2 ret finger protein like 2 NM_001098527.3 74% 71.6% (many diffs)
14 human 10739 RFPL2 ret finger protein like 2 XM_011529832.2 74% 71.6% (many diffs)
15 human 10739 RFPL2 ret finger protein like 2 NM_001364983.1 67.3% 65.1% (many diffs)
16 human 10739 RFPL2 ret finger protein like 2 NM_001364986.1 67.3% 65.1% (many diffs)
17 human 10739 RFPL2 ret finger protein like 2 XM_011529826.2 67.3% 65.1% (many diffs)
18 human 10739 RFPL2 ret finger protein like 2 XM_011529827.3 67.3% 65.1% (many diffs)
19 human 10739 RFPL2 ret finger protein like 2 XM_011529828.2 67.3% 65.1% (many diffs)
20 human 10738 RFPL3 ret finger protein like 3 XM_017028534.1 41% 35% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
930
ORF length:
864
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tgcactcttc caagaagcaa gcagctgtcc cgtctgctca gactatctgg
121aaaaaccaat gtccctggag tgtggatgca ccgtctgcct caagtgcatc aattcgctgc
181agaaggagcc ccatggggag gatctgcttt gctgttgctg ttccatggtc tctcagagga
241acaaaatcag gcccaatcgg cagctagaga ggctggtttc ccacatcaag gaactggagc
301ccaagatgaa gaagattcta cagatgaacc caaggatgcg gaagttccaa gtggatatga
361ccttggatgc cgacacagcc aacaacttcc tcctcatttc tgacgacctc aggagcgtcc
421gaagtgggct catcacacag aatcggcaag accttgccga gagatttgac gtgtccgttt
481gcatcctggg ctcccctcgc tttacctgtg gccgccacta ctgggaggtg gacgtgggaa
541caagcacaga atgggacctg ggagtctgca gagaatctgt tcactgcaaa gggaagatcc
601agctgaccac agagcttgga ttctggactg tgagtttgag ggatggaagc cgcctctctg
661ccagcacggt gccgctgact ttcctcttag tagaccgcaa gttacagcga gtggggattt
721ttctggatat gggcatgcag aacgtttcct tttttgatgc tgaaagtggt tcccatgtct
781atacattcag gagcgtctct gctgaggagc cactgcgccc atttttggct ccttcaattc
841cacctaatgg tgatcagggt gtcttgagca tctgtccttt gatgaactca ggcactactg
901atgctccagt ccgtcctggg gaggccaaat acccaacttt cttgtacaaa gtggttggta
961agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
1021ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)