Construct: ORF ccsbBroad304_07961

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006383.1_s304c1, BRDN0000400599
Derived from:
ccsbBroadEn_07961
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RCHY1 (25898)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07961
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25898 RCHY1 ring finger and CHY zinc fi... NM_015436.3 99.8% 99.6% 425G>A
2 human 25898 RCHY1 ring finger and CHY zinc fi... NM_001009922.2 96.4% 96.1% 425G>A;509_510ins27
3 human 25898 RCHY1 ring finger and CHY zinc fi... NM_001278538.1 91.4% 88.8% 0_1ins22;22_23ins44;359G>A
4 human 25898 RCHY1 ring finger and CHY zinc fi... NM_001278536.1 84.5% 84.2% 90_91ins120;305G>A
5 human 25898 RCHY1 ring finger and CHY zinc fi... NM_001278537.1 81% 80.8% 90_91ins120;305G>A;389_390ins27
6 human 25898 RCHY1 ring finger and CHY zinc fi... NM_001278539.1 51.2% 50.9% 0_1ins381;44G>A
7 human 25898 RCHY1 ring finger and CHY zinc fi... XM_011531838.2 51.2% 50.9% 0_1ins381;44G>A
8 human 25898 RCHY1 ring finger and CHY zinc fi... XM_011531839.2 51.2% 50.9% 0_1ins381;44G>A
9 human 25898 RCHY1 ring finger and CHY zinc fi... XM_024453984.1 47.7% 47.5% 0_1ins381;44G>A;128_129ins27
10 human 25898 RCHY1 ring finger and CHY zinc fi... NR_103723.1 17.6% (many diffs)
11 human 25898 RCHY1 ring finger and CHY zinc fi... NR_037913.1 17.4% (many diffs)
12 human 25898 RCHY1 ring finger and CHY zinc fi... NR_037914.1 17.3% (many diffs)
13 human 25898 RCHY1 ring finger and CHY zinc fi... NR_103724.1 16.7% (many diffs)
14 human 25898 RCHY1 ring finger and CHY zinc fi... NR_103725.1 15.5% (many diffs)
15 mouse 68098 Rchy1 ring finger and CHY zinc fi... NM_026557.4 87.8% 90% (many diffs)
16 mouse 68098 Rchy1 ring finger and CHY zinc fi... NM_001271797.1 74.2% 75.4% (many diffs)
17 mouse 68098 Rchy1 ring finger and CHY zinc fi... XM_006535191.3 59.2% 50.1% (many diffs)
18 mouse 68098 Rchy1 ring finger and CHY zinc fi... NR_073442.1 33% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
849
ORF length:
783
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggcgacggcc cgggaagatg gcgccagcgg tcaagagcga ggtcagcggg
121gctgcgagca ctatgacaga ggatgtctcc taaaggcacc ttgctgtgac aagctttata
181cttgccgctt gtgtcatgat aacaatgaag atcatcaact agatcgcttt aaagtgaagg
241aagtgcagtg cataaactgt gaaaaaattc aacatgccca acagacttgt gaagaatgta
301gcacattgtt tggagaatat tattgcgata tatgccattt gtttgacaaa gataagaagc
361agtatcactg tgaaaactgt ggaatttgta ggattggtcc aaaggaagat tttttccatt
421gtttgaaatg taacttatgc ctagctatga atcttcaagg aagacacaag tgtattgaaa
481atgtgtccca acagaattgt ccaatatgtt tggaggacat tcacacatcc cgtgttgttg
541ctcatgtctt gccatgtgga catcttttac atagaacgtg ttatgaagaa atgttgaaag
601aaggctacag atgtccatta tgtatgcact ctgctttaga tatgaccagg tattggagac
661agctggatga tgaagtagca cagactccta tgccatcaga atatcagaac atgactgtgg
721atattctctg caatgactgt aatggacgat ccactgttca gtttcatata ttaggcatga
781aatgtaagat ttgtgaatcc tataatactg ctcaagctgg aggacgtaga atttcactgg
841atcagcaatg cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
901tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
961tcaacctctg gatta

Download FASTA (ORF) (Full)