Construct: ORF ccsbBroad304_07962

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007934.1_s304c1, BRDN0000409028
Derived from:
ccsbBroadEn_07962
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNOT10 (25904)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07962
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25904 CNOT10 CCR4-NOT transcription comp... NM_015442.3 99.9% 100% 1344G>T
2 human 25904 CNOT10 CCR4-NOT transcription comp... XM_017006109.2 99.8% 99.8% 1344G>T;1510_1511insGCA
3 human 25904 CNOT10 CCR4-NOT transcription comp... XM_017006110.2 98.3% 98.2% 1344G>T;1840_1841ins36
4 human 25904 CNOT10 CCR4-NOT transcription comp... XM_017006111.2 98.2% 98.1% 1344G>T;1510_1511insGCA;1837_1838ins36
5 human 25904 CNOT10 CCR4-NOT transcription comp... NM_001256741.2 96.3% 96.2% 1344G>T;1514_1515ins81
6 human 25904 CNOT10 CCR4-NOT transcription comp... XM_017006112.2 94.7% 94.4% 1344G>T;1514_1515ins81;1759_1760ins36
7 human 25904 CNOT10 CCR4-NOT transcription comp... NM_001256742.1 92% 91.9% (many diffs)
8 human 25904 CNOT10 CCR4-NOT transcription comp... XM_006713084.3 91.8% 91.7% (many diffs)
9 human 25904 CNOT10 CCR4-NOT transcription comp... XM_006713085.3 90.5% 90.2% (many diffs)
10 human 25904 CNOT10 CCR4-NOT transcription comp... XM_011533566.2 88.6% 88.4% (many diffs)
11 human 25904 CNOT10 CCR4-NOT transcription comp... XR_001740089.1 76.2% (many diffs)
12 human 25904 CNOT10 CCR4-NOT transcription comp... XM_011533567.2 69.3% 69.3% 0_1ins684;660G>T
13 human 25904 CNOT10 CCR4-NOT transcription comp... NR_046352.2 69% (many diffs)
14 mouse 78893 Cnot10 CCR4-NOT transcription comp... NM_153585.5 88.6% 96.3% (many diffs)
15 mouse 78893 Cnot10 CCR4-NOT transcription comp... XM_006512399.3 88.4% 96.2% (many diffs)
16 mouse 78893 Cnot10 CCR4-NOT transcription comp... XM_017313699.1 87% 94.6% (many diffs)
17 mouse 78893 Cnot10 CCR4-NOT transcription comp... XR_871264.2 73.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2298
ORF length:
2232
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tgcagacaag cctgcagatc agggagcaga gaaacatgaa ggcacaggtc
121agtcctctgg gatcactgat caagagaagg agttatccac caatgctttc caagctttca
181catctggaaa ttatgatgcc tgtctacaac accttgcctg tctacaagat ataaacaaag
241atgattataa aataattttg aatacagcag tagctgagtt ttttaaaagt aaccaaacaa
301caacagataa tttgagacaa acacttaacc agctgaagaa tcaggtccac tcagctgttg
361aagaaatgga tggattagat gatgttgaaa acagcatgtt gtactataat caagcagtca
421ttctttatca tctgcggcag tatacagaag ccatatcagt tggtgaaaaa ctttatcagt
481tcatagagcc ttttgaagaa aaatttgccc aagcagtgtg ttttttgctt gtagacctgt
541atatattaac ctaccaagct gagaaagctt tgcatcttct tgctgtccta gaaaaaatga
601tttcacaggg taacaataac aaaaatggaa agaatgagac tggtaataac aacaacaaag
661atggatctaa tcataaagct gaaagtggag ctctaataga agctgcaaaa tcaaagatac
721atcagtacaa agtacgagct tatatccaaa tgaagtctct gaaagcatgt aaaagggaaa
781tcaagtcagt catgaataca gctggaaatt ccgcaccctc tctctttctt aaaagcaatt
841ttgagtactt aagaggtaat tatcgaaaag ccgtgaagct attaaatagt tcaaacattg
901ctgagcatcc aggattcatg aaaacaggtg aatgcttgag atgcatgttc tggaataacc
961ttggttgcat ccattttgcc atgagcaagc acaatttggg aatattctac tttaaaaagg
1021ctctgcaaga gaatgacaat gtctgtgcac agctcagtgc aggtagcact gatccaggta
1081aaaaattttc aggaagaccc atgtgtacgt tactaaccaa taagagatat gagttgctgt
1141ataactgtgg aattcagctt cttcacattg gaaggcctct tgctgccttc gaatgtctga
1201ttgaagctgt tcaggtttat catgcaaatc ctcgcctctg gctacggctg gctgaatgct
1261gcattgctgc caataagggg acttctgaac aagaaactaa aggccttccc agcaaaaaag
1321gaattgtaca gtctattgtt ggtcaaggct atcatcgtaa aatagttttg gcatcacagt
1381ctatacagaa tactgtttat aatgatggtc agtcttcggc cattcctgta gccagtatgg
1441agtttgcagc catatgtctc agaaatgcct tgttgctgct acctgaagaa cagcaagatc
1501caaagcagga aaatggggct aaaaatagta atcaattagg tgggaacaca gagagcagcg
1561aaagcagtga aacttgcagc agtaaaagcc atgatggaga taaattcatt ccagctccac
1621cttcttctcc attgagaaaa caggaattag aaaacttaaa gtgctccata cttgcttgca
1681gtgcctacgt ggctctggct ttgggtgata acctcatggc tttgaatcat gcagataaac
1741ttcttcagca gcccaagctg tcaggatctc ttaagttttt gggacattta tatgctgcag
1801aagccctcat ctctctcgac agaatatctg atgccattac tcacttgaac ccggagaatg
1861tcactgatgt ctccttaggg atctcttcaa atgagcagga ccaaggatca gacaaaggtg
1921aaaatgaagc aatggaatcc tctggtaagc gggcccctca gtgctacccc agttccgtca
1981actctgccag gactgtgatg ctgttcaacc ttggcagcgc ttactgcctg aggagcgaat
2041atgacaaagc ccgaaagtgt ctccaccagg cggcttcaat gatccatcct aaagaggtgc
2101cccctgaggc catcttgctg gcagtctacc ttgaactgca gaatggtaat actcagctgg
2161ccttacagat catcaaaagg aatcagctgc tccctgcagt gaaaacacac tctgaagtga
2221gaaagaagcc agtgtttcag cctgtccacc cgatccagcc catccaaatg ccggctttca
2281ccactgtgca gagaaagtgc ccaactttct tgtacaaagt ggttggtaag cctatcccta
2341accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
2401agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)