Transcript: Mouse XM_017313699.1

PREDICTED: Mus musculus CCR4-NOT transcription complex, subunit 10 (Cnot10), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cnot10 (78893)
Length:
2744
CDS:
279..2477

Additional Resources:

NCBI RefSeq record:
XM_017313699.1
NBCI Gene record:
Cnot10 (78893)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017313699.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000258024 AGCACTCAAGACTGTTATAAA pLKO_005 2701 3UTR 100% 15.000 12.000 N Cnot10 n/a
2 TRCN0000201465 CAAGCTGTCTGGCTCTCTTAA pLKO.1 1967 CDS 100% 13.200 10.560 N Cnot10 n/a
3 TRCN0000250229 GGTCAGGGATATCACCGTAAA pLKO_005 1554 CDS 100% 10.800 8.640 N Cnot10 n/a
4 TRCN0000192597 GTCTATTGTTGGTCAGGGATA pLKO.1 1544 CDS 100% 4.050 3.240 N Cnot10 n/a
5 TRCN0000250230 TGCTGCATTGCTGCCAATAAA pLKO_005 1470 CDS 100% 15.000 10.500 N Cnot10 n/a
6 TRCN0000250231 TTGCCTGTCTCCAAGATATAA pLKO_005 427 CDS 100% 15.000 10.500 N Cnot10 n/a
7 TRCN0000190628 GCCTTCGAGTGTCTGATTGAA pLKO.1 1398 CDS 100% 5.625 3.938 N Cnot10 n/a
8 TRCN0000250228 GGCTCTGGCCTTAGGTGATAA pLKO_005 1904 CDS 100% 13.200 7.920 N Cnot10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017313699.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07962 pDONR223 100% 87% 94.6% None (many diffs) n/a
2 ccsbBroad304_07962 pLX_304 0% 87% 94.6% V5 (many diffs) n/a
3 TRCN0000471019 ACATAGGAGTATCCCGAGGAAAGA pLX_317 16.4% 87% 94.6% V5 (many diffs) n/a
4 ccsbBroadEn_15775 pDONR223 0% 83.7% 90.7% None (many diffs) n/a
5 ccsbBroad304_15775 pLX_304 0% 83.7% 90.7% V5 (many diffs) n/a
6 TRCN0000470021 AGCGAGACGGGAACTCCTATTCAC pLX_317 16.9% 83.7% 90.7% V5 (many diffs) n/a
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