Construct: ORF ccsbBroad304_08048

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003219.1_s304c1, BRDN0000409297
Derived from:
ccsbBroadEn_08048
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UTP25 (27042)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08048
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27042 UTP25 UTP25 small subunit process... NM_014388.7 99.9% 100% 144A>G
2 human 27042 UTP25 UTP25 small subunit process... XM_006711275.4 74.7% 73.6% (many diffs)
3 human 27042 UTP25 UTP25 small subunit process... XM_011509418.3 62.3% 62.3% 0_1ins855
4 mouse 215193 Diexf digestive organ expansion f... NM_145415.2 84.2% 86.8% (many diffs)
5 mouse 215193 Diexf digestive organ expansion f... XR_373895.2 71.9% (many diffs)
6 mouse 215193 Diexf digestive organ expansion f... XR_001783764.1 68.7% (many diffs)
7 mouse 215193 Diexf digestive organ expansion f... XM_006497250.1 55% 59.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2334
ORF length:
2268
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg caaacgcggg agccggagcc agagccagct actcaacacc ctaactaaaa
121agcagaagaa acatcttcga gatttcggcg aggagcatcc cttctatgac agggtttcca
181gaaaggaagc aaagccacag atttgtcagc tgtcagagag ttcagattct tcagattctg
241aaagcgactc agagagtgaa ccacaacaag tttctggcta ccacagacta cttgctacat
301taaagaatgt ttctgaggaa gaagaggaag atgaggagga ggaagaggaa gaagacagta
361ttgtagatga tgcagaaatg aacgatgaag atggtggtag cgatgtcagt gtggaagaag
421agatggctgc agagtctact gaaagtccag agaatgtagc tttatctgct gaccctgagg
481gaaaagaaga tggggaagag ccaccgggca catcacaaac atcccccgaa gagttcacag
541atgcaaaaca cgagtcactg ttcagcctgg aaaccaattt tctggaagag gaaagtggag
601acaactcttc tttgaaagcc tctcaagatc catttcttca acatgtgaac aaagaactga
661aagaaaaagc aattcaggct gttgccacaa atcccaaaac tacccacgag cttaaatggc
721ctattctggg ccagcttttc ttttcctcta agtttcagaa gttggaaaca tttaaacccc
781caaaggatat tgacttaaag tcacttcatc tccagaagcc tctggaatcc acctggacta
841agaccaacag ccagttccta tctggtcccc aaaaatcaag cagcccattc acccccctcc
901agaaagaact cttcttaatt atgaattctt accgggacct gttctacccg gaaaggactg
961ctctgaagaa cggggaagag atccgccatg tgtattgcct gcatgtgata aatcacatcc
1021tcaaagccaa tgcccaggtg cttggcaaca atagcagacg ccgaagccag aagtttggag
1081tgggtgatga tgatgacttc agagaccaag ggttaacaag gcccaaggta ctgatagtgg
1141tgccattccg ggaagctgct ttgcgggtgg tgcagctctt catcagcctc ctcgagggtg
1201acagcaagaa gaaaatcatt gtgagcaaca aaaagaggtt tcagggagaa tatggatcag
1261atcccgagga gagaccaccc aacttgaaga ggcctgagga ttatgaagcc gtatttgtgg
1321gcaatattga tgaccacttc aggattggag tggcaatact tcagagaagc atccgactct
1381atgccccgtt ttactcctcg gatatcctca ttgcttcccc cctgggcttg aggaccatca
1441ttggtggaga aggagagaag aagagagatt ttgactttct gtcttctatc gagcttctca
1501tcattgatca agctgacatt tacctgatgc agaactggga gcatgtcctg catttgatga
1561atcacatgaa cctactaccc ctggactcac atggggtaga cttttctcga gtgcggatgt
1621ggagcctcaa taattggtcc aagtactatc gccagacact gctatttggg gcccttcagg
1681atgcccagat caactcagtg ttcaacaagt actgtgtcaa catgcaaggc caggtggccg
1741tgaggaatgt cccaatgaca ggctctatca gtcatgtcct ggtgcagctc ccacatgtct
1801tccagaggat ggaagctgaa aacctagctt cagtgattga tgccaggttt aacttttttg
1861tgaacaagat tttgccacag tatcgtgatg cagtcatgtc tcacacgctc atctatatcc
1921cctcctactt tgacttcgtg cgtcttcgaa attacttcaa gaaggaggaa ttgaatttta
1981cccacatctg cgagtacacg cagaagtctg gtgtctccag ggccagacac ttcttccttc
2041aaggagagaa acagtttcta cttttcacag agcgcttcca tttctacaaa aggtatacaa
2101taaaaggcat caggaacctg attttctatg aactgccgac atatccacac ttttacagtg
2161aaatctgtaa tatgctgaga gccaccaaca gaggagaaga ggccacgtgg acctgcactg
2221ttctctactc caaatatgat gcccagaggt tagctgccgt ggttggtgtg gagcgggcgg
2281cacagatgct acagtccaac aagaatgtcc acctcttcat tactggagaa aaatgcccaa
2341ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
2401cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)