Construct: ORF ccsbBroad304_08323

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012830.1_s304c1, BRDN0000398880
Derived from:
ccsbBroadEn_08323
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM49B (51571)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08323
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51571 FAM49B family with sequence simila... NM_001256763.2 99.8% 99.6% 507C>A
2 human 51571 FAM49B family with sequence simila... NM_001353242.2 99.8% 99.6% 507C>A
3 human 51571 FAM49B family with sequence simila... NM_001353243.2 99.8% 99.6% 507C>A
4 human 51571 FAM49B family with sequence simila... NM_001353244.2 99.8% 99.6% 507C>A
5 human 51571 FAM49B family with sequence simila... NM_001353245.1 99.8% 99.6% 507C>A
6 human 51571 FAM49B family with sequence simila... NM_001353246.1 99.8% 99.6% 507C>A
7 human 51571 FAM49B family with sequence simila... NM_001353247.1 99.8% 99.6% 507C>A
8 human 51571 FAM49B family with sequence simila... NM_001353248.2 99.8% 99.6% 507C>A
9 human 51571 FAM49B family with sequence simila... NM_001353249.1 99.8% 99.6% 507C>A
10 human 51571 FAM49B family with sequence simila... NM_001353250.1 99.8% 99.6% 507C>A
11 human 51571 FAM49B family with sequence simila... NM_001353251.1 99.8% 99.6% 507C>A
12 human 51571 FAM49B family with sequence simila... NM_001353252.1 99.8% 99.6% 507C>A
13 human 51571 FAM49B family with sequence simila... NM_001353253.1 99.8% 99.6% 507C>A
14 human 51571 FAM49B family with sequence simila... NM_001353254.2 99.8% 99.6% 507C>A
15 human 51571 FAM49B family with sequence simila... NM_001353255.1 99.8% 99.6% 507C>A
16 human 51571 FAM49B family with sequence simila... NM_001353256.2 99.8% 99.6% 507C>A
17 human 51571 FAM49B family with sequence simila... NM_001353257.2 99.8% 99.6% 507C>A
18 human 51571 FAM49B family with sequence simila... NM_001353258.2 99.8% 99.6% 507C>A
19 human 51571 FAM49B family with sequence simila... NM_001353259.2 99.8% 99.6% 507C>A
20 human 51571 FAM49B family with sequence simila... NM_001353260.2 99.8% 99.6% 507C>A
21 human 51571 FAM49B family with sequence simila... NM_001353261.2 99.8% 99.6% 507C>A
22 human 51571 FAM49B family with sequence simila... NM_001353262.2 99.8% 99.6% 507C>A
23 human 51571 FAM49B family with sequence simila... NM_001353263.2 99.8% 99.6% 507C>A
24 human 51571 FAM49B family with sequence simila... NM_001353264.2 99.8% 99.6% 507C>A
25 human 51571 FAM49B family with sequence simila... NM_001353265.2 99.8% 99.6% 507C>A
26 human 51571 FAM49B family with sequence simila... NM_001353266.2 99.8% 99.6% 507C>A
27 human 51571 FAM49B family with sequence simila... NM_001353267.2 99.8% 99.6% 507C>A
28 human 51571 FAM49B family with sequence simila... NM_001353268.2 99.8% 99.6% 507C>A
29 human 51571 FAM49B family with sequence simila... NM_016623.5 99.8% 99.6% 507C>A
30 human 51571 FAM49B family with sequence simila... XM_011517112.3 99.8% 99.6% 507C>A
31 human 51571 FAM49B family with sequence simila... XM_011517121.3 99.8% 99.6% 507C>A
32 human 51571 FAM49B family with sequence simila... XM_017013545.2 99.8% 99.6% 507C>A
33 human 51571 FAM49B family with sequence simila... XM_017013548.1 99.8% 99.6% 507C>A
34 human 51571 FAM49B family with sequence simila... XM_017013551.2 99.8% 99.6% 507C>A
35 human 51571 FAM49B family with sequence simila... XM_024447180.1 99.8% 99.6% 507C>A
36 human 51571 FAM49B family with sequence simila... NM_001353302.1 96.9% 96.6% (many diffs)
37 human 51571 FAM49B family with sequence simila... NM_001353303.1 96.9% 96.6% (many diffs)
38 human 51571 FAM49B family with sequence simila... NM_001353304.1 96.9% 96.6% (many diffs)
39 human 51571 FAM49B family with sequence simila... NM_001353305.1 96.9% 96.6% (many diffs)
40 human 51571 FAM49B family with sequence simila... NM_001353306.2 96.9% 96.6% (many diffs)
41 human 51571 FAM49B family with sequence simila... NM_001353307.2 96.9% 96.6% (many diffs)
42 human 51571 FAM49B family with sequence simila... NM_001353308.1 96.9% 96.6% (many diffs)
43 human 51571 FAM49B family with sequence simila... NM_001353309.1 96.9% 96.6% (many diffs)
44 human 51571 FAM49B family with sequence simila... NM_001353310.2 96.9% 96.6% (many diffs)
45 human 51571 FAM49B family with sequence simila... NM_001353311.2 96.9% 96.6% (many diffs)
46 human 51571 FAM49B family with sequence simila... NM_001353312.2 96.9% 96.6% (many diffs)
47 human 51571 FAM49B family with sequence simila... NM_001353313.2 96.9% 96.6% (many diffs)
48 human 51571 FAM49B family with sequence simila... NM_001353314.2 96.9% 96.6% (many diffs)
49 human 51571 FAM49B family with sequence simila... NM_001353315.2 96.9% 96.6% (many diffs)
50 human 51571 FAM49B family with sequence simila... XM_017013554.2 96.9% 96.6% (many diffs)
51 human 51571 FAM49B family with sequence simila... XM_017013557.2 96.9% 96.6% (many diffs)
52 human 51571 FAM49B family with sequence simila... NM_001353316.2 94.7% 89.5% (many diffs)
53 human 51571 FAM49B family with sequence simila... NM_001330612.2 54.8% 54.6% 0_1ins438;69C>A
54 human 51571 FAM49B family with sequence simila... NM_001353269.1 54.8% 54.6% 0_1ins438;69C>A
55 human 51571 FAM49B family with sequence simila... NM_001353270.1 54.8% 54.6% 0_1ins438;69C>A
56 human 51571 FAM49B family with sequence simila... NM_001353271.1 54.8% 54.6% 0_1ins438;69C>A
57 human 51571 FAM49B family with sequence simila... NM_001353272.1 54.8% 54.6% 0_1ins438;69C>A
58 human 51571 FAM49B family with sequence simila... NM_001353273.1 54.8% 54.6% 0_1ins438;69C>A
59 human 51571 FAM49B family with sequence simila... NM_001353274.1 54.8% 54.6% 0_1ins438;69C>A
60 human 51571 FAM49B family with sequence simila... NM_001353275.1 54.8% 54.6% 0_1ins438;69C>A
61 human 51571 FAM49B family with sequence simila... NM_001353276.2 54.8% 54.6% 0_1ins438;69C>A
62 human 51571 FAM49B family with sequence simila... NM_001353277.1 54.8% 54.6% 0_1ins438;69C>A
63 human 51571 FAM49B family with sequence simila... NM_001353278.1 54.8% 54.6% 0_1ins438;69C>A
64 human 51571 FAM49B family with sequence simila... NM_001353279.1 54.8% 54.6% 0_1ins438;69C>A
65 human 51571 FAM49B family with sequence simila... NM_001353280.1 54.8% 54.6% 0_1ins438;69C>A
66 human 51571 FAM49B family with sequence simila... NM_001353281.1 54.8% 54.6% 0_1ins438;69C>A
67 human 51571 FAM49B family with sequence simila... NM_001353282.2 54.8% 54.6% 0_1ins438;69C>A
68 human 51571 FAM49B family with sequence simila... NM_001353283.2 54.8% 54.6% 0_1ins438;69C>A
69 human 51571 FAM49B family with sequence simila... NM_001353284.2 54.8% 54.6% 0_1ins438;69C>A
70 human 51571 FAM49B family with sequence simila... NM_001353285.2 54.8% 54.6% 0_1ins438;69C>A
71 human 51571 FAM49B family with sequence simila... NM_001353286.2 54.8% 54.6% 0_1ins438;69C>A
72 human 51571 FAM49B family with sequence simila... NM_001353287.2 54.8% 54.6% 0_1ins438;69C>A
73 human 51571 FAM49B family with sequence simila... NM_001353288.2 54.8% 54.6% 0_1ins438;69C>A
74 human 51571 FAM49B family with sequence simila... NM_001353289.2 54.8% 54.6% 0_1ins438;69C>A
75 human 51571 FAM49B family with sequence simila... NM_001353290.2 54.8% 54.6% 0_1ins438;69C>A
76 human 51571 FAM49B family with sequence simila... NM_001353291.2 54.8% 54.6% 0_1ins438;69C>A
77 human 51571 FAM49B family with sequence simila... NM_001353292.2 54.8% 54.6% 0_1ins438;69C>A
78 human 51571 FAM49B family with sequence simila... NM_001353293.2 54.8% 54.6% 0_1ins438;69C>A
79 human 51571 FAM49B family with sequence simila... NM_001353294.2 54.8% 54.6% 0_1ins438;69C>A
80 human 51571 FAM49B family with sequence simila... NM_001353295.2 54.8% 54.6% 0_1ins438;69C>A
81 human 51571 FAM49B family with sequence simila... NM_001353296.2 54.8% 54.6% 0_1ins438;69C>A
82 human 51571 FAM49B family with sequence simila... NM_001353297.2 54.8% 54.6% 0_1ins438;69C>A
83 human 51571 FAM49B family with sequence simila... NM_001353298.2 54.8% 54.6% 0_1ins438;69C>A
84 human 51571 FAM49B family with sequence simila... NM_001353299.2 54.8% 54.6% 0_1ins438;69C>A
85 human 51571 FAM49B family with sequence simila... NM_001353300.2 54.8% 54.6% 0_1ins438;69C>A
86 human 51571 FAM49B family with sequence simila... NM_001353301.2 54.8% 54.6% 0_1ins438;69C>A
87 mouse 223601 Fam49b family with sequence simila... NM_144846.5 94.7% 99.3% (many diffs)
88 mouse 223601 Fam49b family with sequence simila... XM_006520761.2 94.7% 99.3% (many diffs)
89 mouse 223601 Fam49b family with sequence simila... XM_006520763.2 94.7% 99.3% (many diffs)
90 mouse 223601 Fam49b family with sequence simila... XM_006520764.3 94.7% 99.3% (many diffs)
91 mouse 223601 Fam49b family with sequence simila... XM_011245563.1 94.7% 99.3% (many diffs)
92 mouse 223601 Fam49b family with sequence simila... XM_011245565.2 94.7% 99.3% (many diffs)
93 mouse 223601 Fam49b family with sequence simila... XM_006520762.3 91.8% 96.2% (many diffs)
94 mouse 223601 Fam49b family with sequence simila... XM_006520765.2 91.8% 96.2% (many diffs)
95 mouse 223601 Fam49b family with sequence simila... XM_011245564.1 91.8% 96.2% (many diffs)
96 mouse 223601 Fam49b family with sequence simila... XM_017316550.1 91.8% 96.2% (many diffs)
97 mouse 223601 Fam49b family with sequence simila... XM_006520766.2 51.9% 54.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1038
ORF length:
972
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gaatcttctt aaagttttga catgcacaga ccttgagcag gggccaaatt
121ttttccttga ttttgaaaat gcccagccta cagagtctga gaaggaaatt tataatcagg
181tgaatgtagt attaaaagat gcagaaggca tcttggagga cttgcagtca tacagaggag
241ctggccacga aatacgagag gcaatccagc atccagcaga tgagaagttg caagagaagg
301catggggtgc agttgttcca ctagtaggca aattaaagaa attttacgaa ttttctcaga
361ggttagaagc agcattaaga ggtcttctgg gagccttaac aagtacccca tattctccca
421cccagcatct agagcgagag caggctcttg ctaaacagtt tgcagaaatt cttcatttca
481cactccggtt tgatgaactc aagatgacaa atcctgccat acagaatgat ttcagctatt
541atagaagaac attgagtcgt atgaggatta aaaatgtacc ggcagaagga gaaaatgaag
601taaataatga attggcaaat cgaatgtctt tgttttatgc tgaggcaact ccaatgctga
661aaaccttgag tgatgccaca acaaaatttg tatcagagaa taaaaattta ccaatagaaa
721ataccacaga ttgtttaagc acaatggcta gtgtatgcag agtcatgctg gaaacaccgg
781aatacagaag cagatttaca aatgaagaga cagtgtcatt ctgcttgagg gtaatggtgg
841gtgtcataat actctatgac cacgtacatc cagtgggagc atttgctaaa acttccaaaa
901ttgatatgaa aggttgtatc aaagttctta aggaccaacc tcctaatagt gtggaaggtc
961ttctaaatgc tctcaggtac acaacaaaac atttgaatga tgagactacc tccaagcaaa
1021ttaaatccat gctgcaatac ccaactttct tgtacaaagt ggttggtaag cctatcccta
1081accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1141agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)