Construct: ORF ccsbBroad304_08341

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004426.1_s304c1, BRDN0000412039
Derived from:
ccsbBroadEn_08341
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UPB1 (51733)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08341
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51733 UPB1 beta-ureidopropionase 1 NM_016327.3 99.9% 99.7% 1136C>T
2 human 51733 UPB1 beta-ureidopropionase 1 XM_011530222.2 93.3% 93.1% 365_445del;1217C>T
3 human 51733 UPB1 beta-ureidopropionase 1 XM_011530224.2 77.2% 77.1% 365_445del;954_955ins198;1019C>T
4 human 51733 UPB1 beta-ureidopropionase 1 XM_017028825.1 76% 71% (many diffs)
5 human 51733 UPB1 beta-ureidopropionase 1 XM_011530223.2 75.7% 71.6% (many diffs)
6 human 51733 UPB1 beta-ureidopropionase 1 XM_017028826.1 74.8% 74.6% (many diffs)
7 human 51733 UPB1 beta-ureidopropionase 1 XM_011530225.2 68.1% 67.9% 0_1ins366;770C>T
8 human 51733 UPB1 beta-ureidopropionase 1 XM_017028827.2 60.5% 49.1% 365_445del;700_701ins170;828_828delAins236
9 human 51733 UPB1 beta-ureidopropionase 1 XM_017028828.1 58% 48.1% (many diffs)
10 human 51733 UPB1 beta-ureidopropionase 1 XR_001755249.1 45.5% (many diffs)
11 human 51733 UPB1 beta-ureidopropionase 1 XR_937867.2 24.8% (many diffs)
12 mouse 103149 Upb1 ureidopropionase, beta NM_133995.4 81.9% 83.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1221
ORF length:
1152
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgggcgct gagtggaagt cgctggagga atgcttggag aagcacctgc
121cgctccccga cttgcaggaa gtgaagcgcg ttctctatgg caaggaactc aggaagcttg
181atctgcccag ggaagctttc gaagctgcct ccagagaaga ctttgaactg cagggatatg
241cctttgaagc agcggaggag cagctgagac gaccccgcat tgtgcacgtg gggctggttc
301agaacagaat ccccctcccc gcaaatgccc ctgtggcaga acaggtctct gcccttcata
361gacgcataaa ggctatcgta gaggtggctg caatgtgtgg agtcaacatc atctgtttcc
421aggaagcatg gactatgccc tttgccttct gtacgagaga gaagcttcct tggacagaat
481ttgctgagtc agcagaggat gggcccacca ccagattctg tcagaagctg gcgaagaacc
541atgacatggt ggtggtgtct cccatcctgg aacgagacag cgagcatggg gatgttttgt
601ggaatacagc cgtggtgatc tccaattccg gagcagtcct gggaaagacc aggaaaaacc
661acatccccag agtgggtgat ttcaacgagt caacttacta catggaggga aacctgggcc
721accccgtgtt ccagacgcag ttcggaagga tcgcggtgaa catttgctac gggcggcacc
781accccctcaa ctggcttatg tacagcatca acggggctga gatcatcttc aacccctcgg
841ccacgatagg agcactcagc gagtccctgt ggcccatcga ggccagaaac gcagccattg
901ccaatcactg cttcacctgc gccatcaatc gagtgggcac cgagcacttc ccgaacgagt
961ttacctcggg agatggaaag aaagctcacc aggactttgg ctacttttat ggctcgagct
1021atgtggcagc ccctgacagc agccggactc ctgggctgtc ccgtagccgg gatggactgc
1081tagttgctaa gctcgaccta aacctctgcc agcaggtgaa tgatgtctgg aacttcaaga
1141tgacgggcag gtatgagatg tacgcacggg agctcgccga agctgtcaag tccaactaca
1201gcctcaccat cgtgaaagag ttgccaactt tcttgtacaa agtggttggt aagcctatcc
1261ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1321ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)