Transcript: Human XR_937867.2

PREDICTED: Homo sapiens beta-ureidopropionase 1 (UPB1), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UPB1 (51733)
Length:
4424
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_937867.2
NBCI Gene record:
UPB1 (51733)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_937867.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000119014 CGCGTTCTCTATGGCAAGGAA pLKO.1 423 3UTR 100% 3.000 4.200 N UPB1 n/a
2 TRCN0000417773 GTAGAGGTGAATGTACTAAAT pLKO_005 1749 3UTR 100% 13.200 10.560 N UPB1 n/a
3 TRCN0000119016 CTAGTTGCTAAGCTCGACCTA pLKO.1 1394 3UTR 100% 0.000 0.000 N UPB1 n/a
4 TRCN0000119012 CAACGAGTCAACTTACTACAT pLKO.1 1040 3UTR 100% 4.950 3.465 N UPB1 n/a
5 TRCN0000119013 GAATGATGTCTGGAACTTCAA pLKO.1 1432 3UTR 100% 4.950 3.465 N UPB1 n/a
6 TRCN0000119015 AGACGCATAAAGGCTATCGTA pLKO.1 636 3UTR 100% 3.000 2.100 N UPB1 n/a
7 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 2875 3UTR 100% 4.050 2.025 Y P3H4 n/a
8 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 2875 3UTR 100% 4.050 2.025 Y ORAI2 n/a
9 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 2875 3UTR 100% 4.050 2.025 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_937867.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08341 pDONR223 100% 24.8% None (many diffs) n/a
2 ccsbBroad304_08341 pLX_304 0% 24.8% V5 (many diffs) n/a
3 TRCN0000475558 CTTCCGAGTGTGCTTCCCCACTAG pLX_317 26.7% 24.8% V5 (many diffs) n/a
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