Construct: ORF ccsbBroad304_08618

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005348.1_s304c1, BRDN0000462192
Derived from:
ccsbBroadEn_08618
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHGC5 (56097)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08618
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56097 PCDHGC5 protocadherin gamma subfami... NM_032407.1 99.8% 99.7% (many diffs)
2 human 56097 PCDHGC5 protocadherin gamma subfami... NM_018929.3 89.3% 86.1% (many diffs)
3 mouse 93708 Pcdhgc5 protocadherin gamma subfami... NM_033583.3 78.7% 79.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2703
ORF length:
2634
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggggcccaag acactcccac agctcgctgg gaaatggcaa gtgctgtgca
121tgttgtcctt gtgctgctgg ggctgggtgt ctgggcagct tcgttactca gtggtggagg
181agtctgagcc ggggacgctg gtggggaatg ttgctcagga tctgggctta aagatgacag
241atctgttgag ccggcggctg caactgggct ctgaggagaa tgggcgctat ttttccctga
301gcttgatgag tggtgccctg gcagtgaatc aaaagattga ccgagaaagc ctatgtggag
361ccagcaccag ctgcctgctg ccagtgcagg tggtgactga acaccccctg gagctaatcc
421gtgtagaggt agagatcctg gatctcaatg acaactctcc tagctttgcc acccctgagc
481gagagatgcg catctcagaa tcagcagcat ctggggcacg attcccactg gacagtgccc
541aggatccgga tgtgggcacc aatactgtga gcttttacac tctaagcccc aacagccact
601tctctctgaa tgtgaagacc ctaaaagatg ggaagccatt cccagagctg gtgctagagc
661agcagctgga tcgtgaagcc caggcaagac atcagctggt gcttactgct gtggatgggg
721ggaccccagc ccgctcaggg accaccctta tctctgtcat cgtgctggac atcaatgata
781atgctccaac cttccaatcc tcagttctac gtgtgggaat cccagagaat gcacccattg
841gtactctgct gctccgcctc aatgccactg atccagacga gggcaccaac ggccaactag
901actattcttt tggagaccac acatctgagg cagtgcggaa cctctttggc ctagacccta
961gcagtggggc aatccatgtg ttgggtccca tagactttga ggagtcacgt ttctatgaaa
1021ttcatgcaag agcccgtgac cagggacagc ctgccatgga gggccactgt gtgattcaag
1081tggatgtggg ggatgtcaat gacaatgccc cagaggtgct attggcctct ttggccaacc
1141ctgtcctaga gagcacacca gtgggcacag tagtggggtt gtttaatgtg cgagaccggg
1201actcaggtag aaatggtgaa gtgagccttg atatctctcc ggacctgcca tttcagatta
1261agccttctga gaaccactac tcgctgctaa ccagccagcc tttggaccgg gaggccacat
1321cccactatat catcgagctg ctggccagcg atgctggttc accttcccta cacaaacatc
1381tcaccatcag gctcaacatt tcagatgtca atgacaatgc accccgcttc aaccagcagc
1441tttacactgc ttacatccta gaaaaccggc ctccgggctc ccttctttgc actgtggctg
1501cctcagatcc agacactggg gataatgccc gcctcaccta ctccattgta ggaaatcagg
1561ttcagggagc cccagcctcc tcctttgtgt atgtcaaccc agaggatgga cggatctttg
1621cccagcgtac ctttgactat gaattgctgc agatgctgca gattgtggtg ggggttcgag
1681actccggctc tcccccattg catgccaaca catctctgca tgtgtttgtc ctagacgaga
1741atgataatgc cccagctgtg ctgcacccac ggccaggctg ggaacactca gccccccagc
1801gtctccctcg ctctgctcct cctggctcct tggtcaccaa ggtgacagcc gtggatgctg
1861atgcaggcca caatgcgtgg ctctcctact cactgttgcc acagtccaca gccccaggac
1921tgttcctcgt gtctacacac actggtgagg tgcgcacagc ccgggcctta ctggaggatg
1981actctgacac ccagcaggtg gtggtcctgg tgagggacaa tggtgaccct tcactctcct
2041ccacagccac agtgctgctg gttctggagg atgaggaccc tgaggaaatg cccaaatcca
2101gtgacttcct catacaccct cctgagcgtt cagaccttac cctttacctc attgtggctc
2161tagcgaccgt cagtctctta tccctagtca ccttcacctt tctgtcagct aagtgccttc
2221agggaaacgc agacggggac gggggtggag ggcagtgctg caggcgccag gactcaccct
2281ccccggactt ctataagcag tccagcccca acctgcaggt gagctcggac ggcacgctca
2341agtacatgga ggtgacgctg cggcccacag actcgcagag ccactgctac aggacgtgct
2401tttcaccggc ctcggacggc agtgacttca cttttctaag acccctcagc gttcagcagc
2461ccacagctct ggcgctggag cctgacgcca tccggtcccg ctctaatacg ctgcgggagc
2521ggagccaggt gaggggctcg gcgccgcccc gggcgacccc tgggggcggc actggagaag
2581ccgcccgtcc tcataaggga ttgaacttgc atccactcct ctccggccgg cttggtcgct
2641ggctgcgctc cacccgattc tcgggatcat tggaccgttt gcgcggaacc agagtggccg
2701atttgccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
2761tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
2821tctggatta

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