Construct: ORF ccsbBroad304_08627

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012873.1_s304c1, BRDN0000462228
Derived from:
ccsbBroadEn_08627
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHAC2 (56134)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08627
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56134 PCDHAC2 protocadherin alpha subfami... NM_031883.2 99.8% 100% 117T>A;361T>C;702C>T
2 human 56134 PCDHAC2 protocadherin alpha subfami... NM_018899.6 86.4% 84.3% (many diffs)
3 mouse 353237 Pcdhac2 protocadherin alpha subfami... NM_001003672.1 75.8% 77.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2721
ORF length:
2652
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggagcaggcg ggcaccagac ctgcggcgac agagcatcca cggctccggc
121ggcccatgcc ctggctgctg ctactgcctc tcctgctgct gttgctgctg ctgctacctg
181gcccagcggc ctcccagctg cgatactctg tgccagagga gcaggcaccc ggcgcgctcg
241tgggcaacgt ggctcgcgcg ctggggcttg agctgcggcg cttggggccg ggttgcttgc
301gcatcaacca tctgggtgcg cccagtccgc gctacctgga gctggacctg acgagtggag
361cgctcttcgt caacgagcgc attgatcggg aggcgctgtg tgagcagcgg cctcgctgcc
421tgctcagcct ggaagtgctg gcgcacaacc ccgtggcggt gagcgccgtt gaggtggaaa
481tattggacat caacgacaac tcaccgcgtt tcccgcggcc caactaccag cttcaggtaa
541gcgaatcggt ggcgcctgga gcgcgctttc acatagagag tgcgcaggac cccgacgtgg
601gcgccaactc agtacagacc tacgagctca gccccagcga gcacttcgag ctggacctta
661agcccctgca ggagaacagt aaagtgcttg agctggtgct gcgtaagggc ctagaccggg
721agcaggcagc cttgcaccac ctggttctca cagccgtgga tgggggcatt ccagcccgct
781cgggtacggc acagatctct gtgcgtgtcc tggacactaa cgacaactct cctgcctttg
841accagtccac ttatcgcgtc cagctacggg aggactcacc cccaggcaca ttggtggtga
901agctgaatgc ctcagacccg gatgagggct ccaatggtga gctcaggtac tccttgagca
961gctacacgtc ggaccgggag aggcagctct tcagcataga tgccagtacc ggggaagtgc
1021gagtaattgg ggggctggat tatgaggaag cctcctccta ccagatctat gtgcaggcga
1081ctgaccgggg tccagtgccc atggcaggtc actgcaaggt gctggtggac atcgtggacg
1141tgaatgacaa tgccccagag gtggtgctca cggacctgta tagcccagtg cctgagaatg
1201ctacacccaa caccattgtg gccgttctca gtgtcaatga ccaagactca ggccccaacc
1261ggaaagtgag cctgggtctg gaggccacac tgcctttccg actgaatggc tttggaaact
1321cctatacact ggtggtgagc ggcccactgg accgagagcg ggtggctgtc tacaacatca
1381cggtgacagc cacagatggg ggaataccgc agctcacatc cctgcgtaca ctgaaggttg
1441agatctctga catcaatgac aatccaccaa gcttcctgga ggactcctat tccatctaca
1501tacaggagaa caatttgcca ggtgtgttgc tctgtactgt gcaagccaca gacccagatg
1561aaaaggagaa tgcagaggtg acctactccc ttctggagag ggagattcaa gggctgccag
1621tcacctccta tgtctccatt aacagtgcca gtggcagcct ttatgctgtc aactcctttg
1681actatgagaa gtttcgggag ttctttgtga ctgtggaggc tcaggacaag gggagcccac
1741cactgagcag cactgtgact gccaacgtat atgtggtgga catgaatgac catgcccctc
1801acattctgta ccctacctca accaactcgt cagcagcctt cgagatggtg cctcgaactg
1861cccctgctgg ctacctggtc accaaagtca tagctatgga ctcagactct gggcaaaatg
1921cttggctttt ttaccatcta gcccagactt ctgacctgga cctctttaag gtagagctgc
1981acacaggaga aattaggact accaggaaga tgggagatga gagtggtagc actttcaacc
2041tgaccgtggt ggtccgagat aatggagagc catcactatc agcctctgtg gccattacag
2101tagctgtggt ggatagggtt tccaaaatcc tccctgacac tcagaggcat gttaagagcc
2161ctcggacata ctctgaaatt accctttatc taataatagc attaagcaca gtgtctttta
2221tatttctttt gacaatcatc attttgagca tcatcaagtg ctaccgctac actgcgtatg
2281gcactgcatg ctgtggaggc ttctgtggag taagggaaag gtcccctgca gaactgtaca
2341aacaagccaa caacaatatt gatgccagga taccgcatgg cctcaaagtg cagcctcact
2401tcattgaagt tcgagggaat ggctccctca ccaagaccta ctgctacaag gcctgtctga
2461cagcaggctc agggagtgac actttcatgt tttacaatac aggggcccag acaggaccag
2521ggccttcggg agcccaagca gcagtgactg acagcaggaa tctcacaggc caaagtggtc
2581agaatgctgg gaacctgatt attctcaaaa atgaggctgt ttctcaaaat gaggtgagac
2641agtggtcagg gggtcttcta caaactcatg catttgttac acatccccca atatcctgtg
2701atttggcttt attgagtcat ttgccaactt tcttgtacaa agtggttggt aagcctatcc
2761ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
2821ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)