Construct: ORF ccsbBroad304_08649

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001544.1_s304c1, BRDN0000462007
Derived from:
ccsbBroadEn_08649
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
JPH1 (56704)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08649
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56704 JPH1 junctophilin 1 NM_001317830.2 99.8% 100% 9C>A;1242T>C
2 human 56704 JPH1 junctophilin 1 NM_001363050.1 99.8% 100% 9C>A;1242T>C
3 human 56704 JPH1 junctophilin 1 NM_001363051.1 99.8% 100% 9C>A;1242T>C
4 human 56704 JPH1 junctophilin 1 NM_020647.4 99.8% 100% 9C>A;1242T>C
5 mouse 57339 Jph1 junctophilin 1 NM_020604.2 89.6% 93% (many diffs)
6 mouse 57339 Jph1 junctophilin 1 XM_011238396.2 89.6% 93% (many diffs)
7 mouse 57339 Jph1 junctophilin 1 XM_011238397.2 89.6% 93% (many diffs)
8 mouse 57339 Jph1 junctophilin 1 XM_011238398.2 89.6% 93% (many diffs)
9 mouse 57339 Jph1 junctophilin 1 XM_011238399.2 89.6% 93% (many diffs)
10 mouse 57339 Jph1 junctophilin 1 XR_001785237.1 69.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2052
ORF length:
1983
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gacgggagga aggttcgact tcgacgatgg cggcacctac tgcggcggct
121gggaggaggg caaggcgcac gggcatggca tctgcacggg gcccaagggc cagggcgagt
181actcgggctc ctggtcgcac ggcttcgagg tggtcggagg ctacacctgg cccagcggca
241acacctacca gggctactgg gcgcagggca agcggcacgg gctgggggtg gagacgaagg
301gcaagtggat gtaccggggg gagtggtcac atggtttcaa ggggcgctac ggggtccggc
361agagcctgtg cacccccgct cgctacgagg gtacctggag taacgggctg caagacgggt
421acggcgtgga gacctacggg gacggaggta cctaccaggg ccagtgggcc ggaggcatgc
481ggcatggcta cggcgtgcgc cagagcgtgc cctacggcat ggccacggtg atccgctcac
541cgctgcgtac ctcgctggcc tcgctgcgca gcgagcagag caatggcagc gtgctccacg
601acgccgcagc cgccgccgac agcccggccg gcacccgcgg cggtttcgtg ctcaacttcc
661acgcagacgc tgagctagcg ggcaagaaga agggcggcct cttccggagg ggctcccttc
721ttggaagcat gaaacttcgc aagtccgaat ccaagtcttc catctcgagc aagcgcagct
781ctgtccgcag cgacgcggcc atgagcagaa ttagttccag cgatgccaac tccacgatca
841gctttggcga tgtagattgt gatttttgcc cggtggaaga ccacgtggac gccaccacca
901cggaaaccta catgggcgag tggaagaacg acaagcgcaa cggcttcggc gttagcgagc
961gctccaatgg catgaagtat gaaggggagt gggcaaataa caagaggcat ggatatggct
1021gtaccgtgtt tcctgacggc tccaaagaag agggaaaata caaaaataat attctggtcc
1081gtgggataag gaagcagctt ataccaataa gacatacaaa aactagggag aaggtggaca
1141gagcaattga aggcgcccaa agggcagctg ccatggccag aaccaaagtg gaaatagcaa
1201attcaaggac tgcacatgcc agagcgaagg ccgatgccgc cgaccaggcc gcgctggccg
1261ctcgccagga gtgcgacatc gcgagagctg tggccaggga gctgtcaccc gatttctacc
1321aaccaggccc tgattacgtc aaacagagat ttcaggaagg tgtagatgct aaagaaaatc
1381cagaagaaaa ggtaccagaa aagccaccta caccaaagga gtctcctcat ttttatcgca
1441aaggcacgac acccccaaga tctcctgagg caagtcccaa acacagccac tctcctgctt
1501cctccccaaa gcccctgaag aagcaaaacc ccagctcagg ggcgagactc aaccaagaca
1561aaaggagtgt ggctgatgag caggtgacgg ccattgtcaa taagcccttg atgtcaaagg
1621ctcccacgaa ggaggcagga gcggttgtgc cccagtccaa gtactctggc cgccaccaca
1681tccccaaccc cagtaacggg gagctgcatt ctcagtatca cggctactac gtgaagctga
1741acgcccccca gcaccctcca gtagacgtgg aggacggcga tggatccagc cagtcttcct
1801cagcactggt gcacaagcca tccgctaaca agtggagtcc ctccaaatct gtgacaaaac
1861cagttgccaa agaaagcaaa gctgagccaa aagctaagaa gtctgaactt gctataccaa
1921agaatccagc aagcaacgat tcatgccctg ctttggaaaa agaagccaat tcaggcccta
1981attcaatcat gattgtcctt gtcatgctgt tgaatatcgg gttggccatt ctttttgttc
2041actttctaac tttgccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
2101tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
2161caatcaacct ctggatta

Download FASTA (ORF) (Full)