Construct: ORF ccsbBroad304_08710

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005669.1_s304c1, BRDN0000405774
Derived from:
ccsbBroadEn_08710
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LYRM1 (57149)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08710
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57149 LYRM1 LYR motif containing 1 NM_001128301.3 99.7% 99.1% 354T>G
2 human 57149 LYRM1 LYR motif containing 1 NM_001128302.3 99.7% 99.1% 354T>G
3 human 57149 LYRM1 LYR motif containing 1 NM_001302835.2 99.7% 99.1% 354T>G
4 human 57149 LYRM1 LYR motif containing 1 NM_001302836.2 99.7% 99.1% 354T>G
5 human 57149 LYRM1 LYR motif containing 1 NM_001369632.1 99.7% 99.1% 354T>G
6 human 57149 LYRM1 LYR motif containing 1 NM_001369633.1 99.7% 99.1% 354T>G
7 human 57149 LYRM1 LYR motif containing 1 NM_001369634.1 99.7% 99.1% 354T>G
8 human 57149 LYRM1 LYR motif containing 1 NM_001369635.1 99.7% 99.1% 354T>G
9 human 57149 LYRM1 LYR motif containing 1 NM_001369636.1 99.7% 99.1% 354T>G
10 human 57149 LYRM1 LYR motif containing 1 NM_001369637.1 99.7% 99.1% 354T>G
11 human 57149 LYRM1 LYR motif containing 1 NM_001369638.1 99.7% 99.1% 354T>G
12 human 57149 LYRM1 LYR motif containing 1 NM_001369639.1 99.7% 99.1% 354T>G
13 human 57149 LYRM1 LYR motif containing 1 NM_001369641.1 99.7% 99.1% 354T>G
14 human 57149 LYRM1 LYR motif containing 1 NM_001369642.1 99.7% 99.1% 354T>G
15 human 57149 LYRM1 LYR motif containing 1 NM_001369644.1 99.7% 99.1% 354T>G
16 human 57149 LYRM1 LYR motif containing 1 NM_001369645.1 99.7% 99.1% 354T>G
17 human 57149 LYRM1 LYR motif containing 1 NM_020424.5 99.7% 99.1% 354T>G
18 human 57149 LYRM1 LYR motif containing 1 XM_017023480.1 99.7% 99.1% 354T>G
19 human 57149 LYRM1 LYR motif containing 1 NM_001369631.1 95.8% 95.2% 160_174del;369T>G
20 human 57149 LYRM1 LYR motif containing 1 XM_011545900.2 95.8% 95.2% 160_174del;369T>G
21 human 57149 LYRM1 LYR motif containing 1 XM_011545901.2 95.8% 95.2% 160_174del;369T>G
22 human 57149 LYRM1 LYR motif containing 1 XM_011545908.2 95.8% 95.2% 160_174del;369T>G
23 human 57149 LYRM1 LYR motif containing 1 XM_017023478.1 95.8% 95.2% 160_174del;369T>G
24 human 57149 LYRM1 LYR motif containing 1 XM_017023475.1 36.6% 36.4% 1_615del;775_789del;984T>G
25 human 57149 LYRM1 LYR motif containing 1 XM_017023477.1 34.6% 26.8% (many diffs)
26 human 57149 LYRM1 LYR motif containing 1 XM_017023476.1 27.7% 27.5% 1_615del;774_775ins93;876T>G
27 human 57149 LYRM1 LYR motif containing 1 NR_126520.2 22.6% (many diffs)
28 human 57149 LYRM1 LYR motif containing 1 NR_161425.1 22.3% (many diffs)
29 human 57149 LYRM1 LYR motif containing 1 NR_161431.1 21.7% (many diffs)
30 human 57149 LYRM1 LYR motif containing 1 NR_126521.2 21.3% (many diffs)
31 human 57149 LYRM1 LYR motif containing 1 NR_126528.2 21.1% (many diffs)
32 human 57149 LYRM1 LYR motif containing 1 NR_126527.2 20.2% (many diffs)
33 human 57149 LYRM1 LYR motif containing 1 NR_161432.1 19.8% (many diffs)
34 human 57149 LYRM1 LYR motif containing 1 NR_161430.1 19.6% (many diffs)
35 human 57149 LYRM1 LYR motif containing 1 XR_950823.2 14.5% (many diffs)
36 mouse 73919 Lyrm1 LYR motif containing 1 NM_001285959.1 87.1% 86.8% (many diffs)
37 mouse 73919 Lyrm1 LYR motif containing 1 NM_001285960.1 87.1% 86.8% (many diffs)
38 mouse 73919 Lyrm1 LYR motif containing 1 NM_001285961.2 87.1% 86.8% (many diffs)
39 mouse 73919 Lyrm1 LYR motif containing 1 NM_029610.3 87.1% 86.8% (many diffs)
40 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508234.3 87.1% 86.8% (many diffs)
41 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508235.3 87.1% 86.8% (many diffs)
42 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508236.3 87.1% 86.8% (many diffs)
43 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508237.3 87.1% 86.8% (many diffs)
44 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508238.3 87.1% 86.8% (many diffs)
45 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508239.3 87.1% 86.8% (many diffs)
46 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508240.3 87.1% 86.8% (many diffs)
47 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508241.3 87.1% 86.8% (many diffs)
48 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508243.3 87.1% 86.8% (many diffs)
49 mouse 73919 Lyrm1 LYR motif containing 1 XM_006508244.3 87.1% 86.8% (many diffs)
50 mouse 73919 Lyrm1 LYR motif containing 1 XM_017312338.1 87.1% 86.8% (many diffs)
51 mouse 73919 Lyrm1 LYR motif containing 1 XM_017312339.1 87.1% 86.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
432
ORF length:
366
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac aacggcaaca cgacaagaag tccttggcct ctaccgcagc attttcaggc
121ttgcgaggaa atggcaggcg acatcagggc agatggaaga caccatcaaa gaaaaacagt
181acatactaaa tgaagccaga acgctgttcc ggaaaaacaa aaatctcacg gacacagacc
241taattaaaca gtgtatagat gaatgcacag ccaggattga aattggactg cattacaaga
301ttccttaccc aaggccaatt catctgcctc caatgggcct taccccactc cgaggccggg
361gacttcgaag ccaagagaaa ctgaggaaac tttccaaacc agtatatctc agatctcagg
421atgaagtttc ctacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
481tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
541caatcaacct ctggatta

Download FASTA (ORF) (Full)