Construct: ORF ccsbBroad304_08710
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005669.1_s304c1, BRDN0000405774
- Derived from:
- ccsbBroadEn_08710
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LYRM1 (57149)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08710
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001128301.3 | 99.7% | 99.1% | 354T>G |
2 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001128302.3 | 99.7% | 99.1% | 354T>G |
3 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001302835.2 | 99.7% | 99.1% | 354T>G |
4 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001302836.2 | 99.7% | 99.1% | 354T>G |
5 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369632.1 | 99.7% | 99.1% | 354T>G |
6 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369633.1 | 99.7% | 99.1% | 354T>G |
7 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369634.1 | 99.7% | 99.1% | 354T>G |
8 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369635.1 | 99.7% | 99.1% | 354T>G |
9 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369636.1 | 99.7% | 99.1% | 354T>G |
10 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369637.1 | 99.7% | 99.1% | 354T>G |
11 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369638.1 | 99.7% | 99.1% | 354T>G |
12 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369639.1 | 99.7% | 99.1% | 354T>G |
13 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369641.1 | 99.7% | 99.1% | 354T>G |
14 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369642.1 | 99.7% | 99.1% | 354T>G |
15 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369644.1 | 99.7% | 99.1% | 354T>G |
16 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369645.1 | 99.7% | 99.1% | 354T>G |
17 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_020424.5 | 99.7% | 99.1% | 354T>G |
18 | human | 57149 | LYRM1 | LYR motif containing 1 | XM_017023480.1 | 99.7% | 99.1% | 354T>G |
19 | human | 57149 | LYRM1 | LYR motif containing 1 | NM_001369631.1 | 95.8% | 95.2% | 160_174del;369T>G |
20 | human | 57149 | LYRM1 | LYR motif containing 1 | XM_011545900.2 | 95.8% | 95.2% | 160_174del;369T>G |
21 | human | 57149 | LYRM1 | LYR motif containing 1 | XM_011545901.2 | 95.8% | 95.2% | 160_174del;369T>G |
22 | human | 57149 | LYRM1 | LYR motif containing 1 | XM_011545908.2 | 95.8% | 95.2% | 160_174del;369T>G |
23 | human | 57149 | LYRM1 | LYR motif containing 1 | XM_017023478.1 | 95.8% | 95.2% | 160_174del;369T>G |
24 | human | 57149 | LYRM1 | LYR motif containing 1 | XM_017023475.1 | 36.6% | 36.4% | 1_615del;775_789del;984T>G |
25 | human | 57149 | LYRM1 | LYR motif containing 1 | XM_017023477.1 | 34.6% | 26.8% | (many diffs) |
26 | human | 57149 | LYRM1 | LYR motif containing 1 | XM_017023476.1 | 27.7% | 27.5% | 1_615del;774_775ins93;876T>G |
27 | human | 57149 | LYRM1 | LYR motif containing 1 | NR_126520.2 | 22.6% | (many diffs) | |
28 | human | 57149 | LYRM1 | LYR motif containing 1 | NR_161425.1 | 22.3% | (many diffs) | |
29 | human | 57149 | LYRM1 | LYR motif containing 1 | NR_161431.1 | 21.7% | (many diffs) | |
30 | human | 57149 | LYRM1 | LYR motif containing 1 | NR_126521.2 | 21.3% | (many diffs) | |
31 | human | 57149 | LYRM1 | LYR motif containing 1 | NR_126528.2 | 21.1% | (many diffs) | |
32 | human | 57149 | LYRM1 | LYR motif containing 1 | NR_126527.2 | 20.2% | (many diffs) | |
33 | human | 57149 | LYRM1 | LYR motif containing 1 | NR_161432.1 | 19.8% | (many diffs) | |
34 | human | 57149 | LYRM1 | LYR motif containing 1 | NR_161430.1 | 19.6% | (many diffs) | |
35 | human | 57149 | LYRM1 | LYR motif containing 1 | XR_950823.2 | 14.5% | (many diffs) | |
36 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | NM_001285959.1 | 87.1% | 86.8% | (many diffs) |
37 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | NM_001285960.1 | 87.1% | 86.8% | (many diffs) |
38 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | NM_001285961.2 | 87.1% | 86.8% | (many diffs) |
39 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | NM_029610.3 | 87.1% | 86.8% | (many diffs) |
40 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508234.3 | 87.1% | 86.8% | (many diffs) |
41 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508235.3 | 87.1% | 86.8% | (many diffs) |
42 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508236.3 | 87.1% | 86.8% | (many diffs) |
43 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508237.3 | 87.1% | 86.8% | (many diffs) |
44 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508238.3 | 87.1% | 86.8% | (many diffs) |
45 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508239.3 | 87.1% | 86.8% | (many diffs) |
46 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508240.3 | 87.1% | 86.8% | (many diffs) |
47 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508241.3 | 87.1% | 86.8% | (many diffs) |
48 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508243.3 | 87.1% | 86.8% | (many diffs) |
49 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_006508244.3 | 87.1% | 86.8% | (many diffs) |
50 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_017312338.1 | 87.1% | 86.8% | (many diffs) |
51 | mouse | 73919 | Lyrm1 | LYR motif containing 1 | XM_017312339.1 | 87.1% | 86.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 432
- ORF length:
- 366
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgac aacggcaaca cgacaagaag tccttggcct ctaccgcagc attttcaggc 121 ttgcgaggaa atggcaggcg acatcagggc agatggaaga caccatcaaa gaaaaacagt 181 acatactaaa tgaagccaga acgctgttcc ggaaaaacaa aaatctcacg gacacagacc 241 taattaaaca gtgtatagat gaatgcacag ccaggattga aattggactg cattacaaga 301 ttccttaccc aaggccaatt catctgcctc caatgggcct taccccactc cgaggccggg 361 gacttcgaag ccaagagaaa ctgaggaaac tttccaaacc agtatatctc agatctcagg 421 atgaagtttc ctacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 481 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 541 caatcaacct ctggatta