Construct: ORF ccsbBroad304_08999
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004680.1_s304c1, BRDN0000400365
- Derived from:
- ccsbBroadEn_08999
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF606 (80095)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08999
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_001348022.2 | 99.9% | 99.8% | 2173G>A |
| 2 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_025027.4 | 99.9% | 99.8% | 2173G>A |
| 3 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_001348023.2 | 88.5% | 88.5% | 0_1ins270;1903G>A |
| 4 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_001348024.2 | 88.5% | 88.5% | 0_1ins270;1903G>A |
| 5 | human | 80095 | ZNF606 | zinc finger protein 606 | NM_001348025.2 | 80% | 79.9% | 0_1ins474;1699G>A |
| 6 | mouse | 67370 | Zfp606 | zinc finger protein 606 | NM_026112.4 | 88.6% | 89% | (many diffs) |
| 7 | mouse | 67370 | Zfp606 | zinc finger protein 606 | XM_006540320.2 | 84.5% | 85.2% | (many diffs) |
| 8 | mouse | 67370 | Zfp606 | zinc finger protein 606 | NM_001310620.1 | 82.7% | 83.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2442
- ORF length:
- 2376
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc agccatcaac ccgtgggcct cctggggtgc ccttacggac caatcttggg 121 ggatgacagc tgttgaccca tgggcctcct gggctctgtg tcctcagtat cctgcctggc 181 acgtggaggg aagcctggag gaggggagga gggccactgg gctcccagca gcccaggttc 241 aggaaccagt gaccttcaag gacgtggccg tggacttcac ccaagaagag tgggggcagc 301 tggaccttgt tcagaggacc ctgtaccgtg atgtgatgct ggagacctat ggtcacctgc 361 tctctgtggg aaatcagatt gccaagcctg aggtcatctc cctgttggag caaggagaag 421 agccgtggtc agtggagcag gcatgtcctc aacgcacttg tccagaatgg gtgagaaatc 481 ttgaaagcaa agcattgatc ccagcacaga gcatttttga ggaagaacaa tcccatggca 541 tgaagttgga aagatatata tgggatgatc cttggttctc caggttagaa gttttgggat 601 gtaaagacca attagaaatg taccacatga accagagtac agctatgagg cagatggtct 661 tcatgcaaaa gcaagtacta tcccagagaa gctctgaatt ctgtggactt ggggcagagt 721 ttagccagaa cttaaacttt gttccatctc agagagtttc tcagatagaa catttctata 781 agcctgatac acatgctcaa agttggagat gtgactcagc cataatgtat gcagataagg 841 ttacctgtga aaataatgat tatgacaaaa ctgtttatca gtccattcaa cctatttacc 901 ctgcaagaat acaaactgga gataatcttt tcaaatgtac tgatgctgtt aaatctttca 961 atcatataat acattttggt gatcataaag gaattcacac aggagaaaaa ctctatgaat 1021 ataaggaatg ccatcaaatc tttaaccaga gcccatcatt taatgaacac ccaaggcttc 1081 atgttggaga aaaccagtat aattacaaag aatatgagaa tatcttttat ttctcatcct 1141 ttatggaaca tcaaaaaatt ggtactgtag agaaagcgta taaatacaat gaatgggaga 1201 aagtctttgg gtatgactct ttccttactc aacatacaag cacttacact gcagagaaac 1261 cctatgacta caatgaatgt gggacgtctt tcatctggag ctcttacctt attcaacata 1321 agaaaactca tactggagaa aaaccctatg aatgtgataa atgtggaaaa gtttttagga 1381 atcgctcagc ccttacgaaa catgaacgga ctcacactgg aataaaaccc tatgaatgta 1441 ataaatgtgg aaaagccttc agctggaatt ctcatcttat tgtacataag agaattcata 1501 caggagaaaa accttatgtt tgtaatgagt gtgggaaatc tttcaactgg aactctcatc 1561 ttattggaca tcagaggact catacaggag agaaaccttt tgaatgtact gaatgtggga 1621 aatcattcag ctggagctcc catcttattg cccatatgag aatgcatact ggagagaaac 1681 cctttaaatg tgatgaatgt gaaaaagctt ttagggacta ctcagccctt agtaaacatg 1741 aaagaactca ttctggagca aaaccatata aatgtactga atgtggaaaa tccttcagct 1801 ggagctccca tcttattgcc catcagagaa ctcacacggg agagaaacca tataactgtc 1861 aggaatgtgg caaagcattc agagaacgct cagccctcac taaacatgag ataattcatt 1921 ctggaattaa gccctatgaa tgtaataaat gtggaaaatc ctgtagccag atggctcacc 1981 ttgttagaca tcaaaggact catactggag aaaaacccta tgaatgcaat aaatgtggaa 2041 aatccttcag tcagagctgt caccttgttg ctcatcggag aattcacact ggtgagaaac 2101 cctataaatg taatcagtgt gaaagatcct ttaactgtag ttctcacctc attgcacacc 2161 ggagaactca tactggagag aaaccataca ggtgtaatga atgtgggaaa gcatttaatg 2221 agagttcatc ccttattata cacctaagaa accatactgg agaaaagccc tacaaatgta 2281 atcattgtga aaaagcattt tgtaagaatt cttcccttat tattcatcag agaatgcata 2341 gtggagagaa acgctttata tgcagtgaat gtggaaaagc ctttagtggt cactcagccc 2401 tacttcaaca ccagagaaat cacagtgaag agaaactgaa ttgcccaact ttcttgtaca 2461 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 2521 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta